Python libs_from_seqids Examples

Example #1

File: test_make_otu_table.py Project: Ecogenomics/FrankenQIIME

 def test_libs_from_seqids(self):
     """libs_from_seqids should identify correct libs"""
     seqids = ['ABC_001', 'DEF_002', 'ABC_003', 'GHI_JKL_001']
     self.assertEqual(libs_from_seqids(seqids),
             set(['ABC', 'DEF', 'GHI_JKL']))

Example #2

File: test_make_otu_table.py Project: rob-knight/qiime

 def test_libs_from_seqids(self):
     """libs_from_seqids should identify correct libs"""
     seqids = ["ABC_001", "DEF_002", "ABC_003", "GHI_JKL_001"]
     self.assertEqual(libs_from_seqids(seqids), set(["ABC", "DEF", "GHI_JKL"]))

Example #3

File: test_make_otu_table.py Project: rob-knight/qiime

 def test_libs_from_seqids(self):
     """libs_from_seqids should identify correct libs"""
     seqids = ['ABC_001', 'DEF_002', 'ABC_003', 'GHI_JKL_001']
     self.assertEqual(libs_from_seqids(seqids),
                      set(['ABC', 'DEF', 'GHI_JKL']))