Python map_sample_ids Examples

Example #1

File: test_transform_coordinate_matrices.py Project: colinbrislawn/qiime

 def test_map_sample_ids(self):
     """Mapping and reordering of sample IDs functions as expected
     """
     expected = ["s4", "s1", "s2", "s3"]
     actual = map_sample_ids(self.sample_ids1, self.sample_id_map1)
     self.assertEqual(actual, expected)
     expected = ["s1", "s2", "s3", "s4"]
     actual = map_sample_ids(self.sample_ids2, self.sample_id_map1)
     self.assertEqual(actual, expected)
     expected = ["s1", "s2", "s3", "s4"]
     actual = map_sample_ids(self.sample_ids3, self.sample_id_map1)
     self.assertEqual(actual, expected)
     # bad sample id raises KeyError
     self.assertRaises(KeyError, map_sample_ids, ["abcd", "aaa", "ccc"], self.sample_id_map1)

Example #2

File: test_transform_coordinate_matrices.py Project: franny911/qiime

 def test_map_sample_ids(self):
     """Mapping and reordering of sample IDs functions as expected
     """
     expected = ['s4', 's1', 's2', 's3']
     actual = map_sample_ids(self.sample_ids1, self.sample_id_map1)
     self.assertEqual(actual, expected)
     expected = ['s1', 's2', 's3', 's4']
     actual = map_sample_ids(self.sample_ids2, self.sample_id_map1)
     self.assertEqual(actual, expected)
     expected = ['s1', 's2', 's3', 's4']
     actual = map_sample_ids(self.sample_ids3, self.sample_id_map1)
     self.assertEqual(actual, expected)
     # bad sample id raises KeyError
     self.assertRaises(KeyError, map_sample_ids, ['abcd', 'aaa', 'ccc'],
                       self.sample_id_map1)

Example #3

File: test_transform_coordinate_matrices.py Project: EESI/qiime

 def test_map_sample_ids(self):
     """Mapping and reordering of sample IDs functions as expected
     """
     expected = ['s4', 's1', 's2', 's3']
     actual = map_sample_ids(self.sample_ids1, self.sample_id_map1)
     self.assertEqual(actual, expected)
     expected = ['s1', 's2', 's3', 's4']
     actual = map_sample_ids(self.sample_ids2, self.sample_id_map1)
     self.assertEqual(actual, expected)
     expected = ['s1', 's2', 's3', 's4']
     actual = map_sample_ids(self.sample_ids3, self.sample_id_map1)
     self.assertEqual(actual, expected)
     # bad sample id raises KeyError
     self.assertRaises(KeyError, map_sample_ids, ['abcd', 'aaa', 'ccc'],
                       self.sample_id_map1)