Python get_rev_primer_seqs Examples

Example #1

File: test_truncate_reverse_primer.py Project: AhmedAbdelfattah/qiime

    def test_get_rev_primer_seqs(self):
        """ Builds dict of reverse primers from mapping file """

        actual_rev_primers = get_rev_primer_seqs(open(self.mapping_fp, "U"))

        expected_rev_primers = {'PC.481': ['CTCTCCG'], 'PC.634': ['CTCTCAG'],
                                'PC.635': ['CTCTCAG'], 'PC.636': ['CTCTCAG'], 'PC.354': ['CTCTCAG',
                                                                                         'TTCTCRG']}

        self.assertEqual(actual_rev_primers, expected_rev_primers)

Example #2

    def test_get_rev_primer_seqs(self):
        """ Builds dict of reverse primers from mapping file """

        actual_rev_primers = get_rev_primer_seqs(open(self.mapping_fp, "U"))

        expected_rev_primers = {'PC.481': ['CTCTCCG'], 'PC.634': ['CTCTCAG'],
                                'PC.635': ['CTCTCAG'], 'PC.636': ['CTCTCAG'], 'PC.354': ['CTCTCAG',
                                                                                         'TTCTCRG']}

        self.assertEqual(actual_rev_primers, expected_rev_primers)