def test_asynchronous(self):
mapping_viz = self.plugin.visualizers['mapping_viz']
artifact1 = Artifact.import_data(Mapping, {'foo': 'abc', 'bar': 'def'})
artifact2 = Artifact.import_data(
Mapping, {'baz': 'abc', 'bazz': 'ghi'})
future = mapping_viz.asynchronous(artifact1, artifact2, 'Key', 'Value')
self.assertIsInstance(future, concurrent.futures.Future)
result = future.result()
# Test properties of the `Results` object.
self.assertIsInstance(result, tuple)
self.assertIsInstance(result, Results)
self.assertEqual(len(result), 1)
self.assertEqual(result.visualization, result[0])
result = result[0]
self.assertIsInstance(result, Visualization)
self.assertEqual(result.type, qiime2.core.type.Visualization)
self.assertIsInstance(result.uuid, uuid.UUID)
# TODO qiime2.sdk.Visualization doesn't have an API to access its
# contents yet. For now, save and assert the correct files are present.
filepath = os.path.join(self.test_dir.name, 'visualization.qzv')
result.save(filepath)
root_dir = str(result.uuid)
expected = {
'VERSION',
'checksums.md5',
'metadata.yaml',
'data/index.html',
'data/css/style.css',
'provenance/metadata.yaml',
'provenance/VERSION',
'provenance/citations.bib',
'provenance/action/action.yaml',
'provenance/artifacts/%s/metadata.yaml' % artifact1.uuid,
'provenance/artifacts/%s/VERSION' % artifact1.uuid,
'provenance/artifacts/%s/citations.bib' % artifact1.uuid,
'provenance/artifacts/%s/action/action.yaml' % artifact1.uuid,
'provenance/artifacts/%s/metadata.yaml' % artifact2.uuid,
'provenance/artifacts/%s/VERSION' % artifact2.uuid,
'provenance/artifacts/%s/citations.bib' % artifact2.uuid,
'provenance/artifacts/%s/action/action.yaml' % artifact2.uuid
}
self.assertArchiveMembers(filepath, root_dir, expected)
def test_asynchronous(self):
mapping_viz = self.plugin.visualizers['mapping_viz']
artifact1 = Artifact.import_data(Mapping, {'foo': 'abc', 'bar': 'def'})
artifact2 = Artifact.import_data(
Mapping, {'baz': 'abc', 'bazz': 'ghi'})
future = mapping_viz.asynchronous(artifact1, artifact2, 'Key', 'Value')
self.assertIsInstance(future, concurrent.futures.Future)
result = future.result()
# Test properties of the `Results` object.
self.assertIsInstance(result, tuple)
self.assertIsInstance(result, Results)
self.assertEqual(len(result), 1)
self.assertEqual(result.visualization, result[0])
result = result[0]
self.assertIsInstance(result, Visualization)
self.assertEqual(result.type, qiime2.core.type.Visualization)
self.assertIsInstance(result.uuid, uuid.UUID)
# TODO qiime2.sdk.Visualization doesn't have an API to access its
# contents yet. For now, save and assert the correct files are present.
filepath = os.path.join(self.test_dir.name, 'visualization.qzv')
result.save(filepath)
root_dir = str(result.uuid)
expected = {
'VERSION',
'checksums.md5',
'metadata.yaml',
'data/index.html',
'data/css/style.css',
'provenance/metadata.yaml',
'provenance/VERSION',
'provenance/citations.bib',
'provenance/action/action.yaml',
'provenance/artifacts/%s/metadata.yaml' % artifact1.uuid,
'provenance/artifacts/%s/VERSION' % artifact1.uuid,
'provenance/artifacts/%s/citations.bib' % artifact1.uuid,
'provenance/artifacts/%s/action/action.yaml' % artifact1.uuid,
'provenance/artifacts/%s/metadata.yaml' % artifact2.uuid,
'provenance/artifacts/%s/VERSION' % artifact2.uuid,
'provenance/artifacts/%s/citations.bib' % artifact2.uuid,
'provenance/artifacts/%s/action/action.yaml' % artifact2.uuid
}
self.assertArchiveMembers(filepath, root_dir, expected)