def post(self, preprocessed_data_id):
# make sure user is admin and can therefore actually submit to VAMPS
if self.current_user.level != 'admin':
raise HTTPError(
403, "User %s cannot submit to VAMPS!" % self.current_user.id)
msg = ''
msg_level = 'success'
preprocessed_data = Artifact(preprocessed_data_id)
state = preprocessed_data.submitted_to_vamps_status()
demux = [
path for _, path, ftype in preprocessed_data.get_filepaths()
if ftype == 'preprocessed_demux'
]
demux_length = len(demux)
if state in ('submitting', 'success'):
msg = "Cannot resubmit! Current state is: %s" % state
msg_level = 'danger'
elif demux_length != 1:
msg = "The study doesn't have demux files or have too many" % state
msg_level = 'danger'
else:
channel = self.current_user.id
job_id = submit(channel, submit_to_VAMPS,
int(preprocessed_data_id))
self.render('compute_wait.html',
job_id=job_id,
title='VAMPS Submission',
completion_redirect='/compute_complete/%s' % job_id)
return
self.display_template(preprocessed_data_id, msg, msg_level)
def post(self, preprocessed_data_id):
# make sure user is admin and can therefore actually submit to VAMPS
if self.current_user.level != "admin":
raise HTTPError(403, "User %s cannot submit to VAMPS!" % self.current_user.id)
msg = ""
msg_level = "success"
preprocessed_data = Artifact(preprocessed_data_id)
state = preprocessed_data.submitted_to_vamps_status()
demux = [path for _, path, ftype in preprocessed_data.get_filepaths() if ftype == "preprocessed_demux"]
demux_length = len(demux)
if state in ("submitting", "success"):
msg = "Cannot resubmit! Current state is: %s" % state
msg_level = "danger"
elif demux_length != 1:
msg = "The study doesn't have demux files or have too many" % state
msg_level = "danger"
else:
channel = self.current_user.id
job_id = submit(channel, submit_to_VAMPS, int(preprocessed_data_id))
self.render(
"compute_wait.html",
job_id=job_id,
title="VAMPS Submission",
completion_redirect="/compute_complete/%s" % job_id,
)
return
self.display_template(preprocessed_data_id, msg, msg_level)
@authenticated
def get(self, preprocessed_data_id):
self.display_template(preprocessed_data_id, "", "")
@authenticated
@execute_as_transaction
def post(self, preprocessed_data_id):
# make sure user is admin and can therefore actually submit to VAMPS
<<<<<<< HEAD
if self.current_user.level != 'admin':
raise HTTPError(403, "User %s cannot submit to VAMPS!" %
self.current_user.id)
msg = ''
msg_level = 'success'
preprocessed_data = Artifact(preprocessed_data_id)
state = preprocessed_data.submitted_to_vamps_status()
demux = [path for _, path, ftype in preprocessed_data.get_filepaths()
if ftype == 'preprocessed_demux']
demux_length = len(demux)
if state in ('submitting', 'success'):
msg = "Cannot resubmit! Current state is: %s" % state
msg_level = 'danger'
elif demux_length != 1:
msg = "The study doesn't have demux files or have too many" % state
msg_level = 'danger'
else:
channel = self.current_user.id
job_id = submit(channel, submit_to_VAMPS,
int(preprocessed_data_id))
