def test_create_duplicate(self):
with self.assertRaises(QiitaDBDuplicateError):
PreprocessedIlluminaParams.create(
"test_error",
max_bad_run_length=3,
min_per_read_length_fraction=0.75,
sequence_max_n=0,
rev_comp_barcode=False,
rev_comp_mapping_barcodes=False,
rev_comp=False,
phred_quality_threshold=3,
barcode_type="golay_12",
max_barcode_errors=1.5)
def test_create(self):
obs_obj = PreprocessedIlluminaParams.create(
"test_create",
max_bad_run_length="3",
min_per_read_length_fraction="0.75",
sequence_max_n="0",
rev_comp_barcode="False",
rev_comp_mapping_barcodes="False",
rev_comp="False",
phred_quality_threshold="3",
barcode_type="hamming_8",
max_barcode_errors="1.5")
obs = obs_obj.to_str()
exp = ("--barcode_type hamming_8 --max_bad_run_length 3 "
"--max_barcode_errors 1.5 --min_per_read_length_fraction 0.75 "
"--phred_quality_threshold 3 --sequence_max_n 0")
self.assertEqual(obs, exp)
