def test_artifact_get_req_no_access(self):
obs = artifact_get_req('*****@*****.**', 1)
exp = {
'status': 'error',
'message': 'User does not have access to study'
}
self.assertEqual(obs, exp)
def test_artifact_get_req(self):
obs = artifact_get_req('*****@*****.**', 1)
path_builder = partial(join, get_mountpoint('raw_data')[0][1])
exp = {
'id':
1,
'type':
'FASTQ',
'study':
1,
'data_type':
'18S',
'timestamp':
datetime(2012, 10, 1, 9, 30, 27),
'visibility':
'private',
'can_submit_vamps':
False,
'can_submit_ebi':
False,
'processing_parameters':
None,
'ebi_run_accessions':
None,
'is_submitted_vamps':
False,
'parents': [],
'filepaths': [{
'fp_id': 1,
'fp': path_builder("1_s_G1_L001_sequences.fastq.gz"),
'fp_type': "raw_forward_seqs",
'checksum': '2125826711',
'fp_size': 58
}, {
'fp_id':
2,
'fp':
path_builder("1_s_G1_L001_sequences_barcodes.fastq.gz"),
'fp_type':
"raw_barcodes",
'checksum':
'2125826711',
'fp_size':
58
}]
}
self.assertEqual(obs, exp)
def test_artifact_get_req(self):
obs = artifact_get_req('*****@*****.**', 1)
exp = {'id': 1,
'type': 'FASTQ',
'study': 1,
'data_type': '18S',
'timestamp': datetime(2012, 10, 1, 9, 30, 27),
'visibility': 'private',
'can_submit_vamps': False,
'can_submit_ebi': False,
'processing_parameters': None,
'ebi_run_accessions': None,
'is_submitted_vamps': False,
'parents': [],
'filepaths': [
(1, join(get_mountpoint('raw_data')[0][1],
'1_s_G1_L001_sequences.fastq.gz'), 'raw_forward_seqs'),
(2, join(get_mountpoint('raw_data')[0][1],
'1_s_G1_L001_sequences_barcodes.fastq.gz'),
'raw_barcodes')]
}
self.assertEqual(obs, exp)
def test_artifact_get_req(self):
obs = artifact_get_req('*****@*****.**', 1)
exp = {'id': 1,
'type': 'FASTQ',
'study': 1,
'data_type': '18S',
'timestamp': datetime(2012, 10, 1, 9, 30, 27),
'visibility': 'private',
'can_submit_vamps': False,
'can_submit_ebi': False,
'processing_parameters': None,
'ebi_run_accessions': None,
'is_submitted_vamps': False,
'parents': [],
'filepaths': [
(1, join(get_mountpoint('raw_data')[0][1],
'1_s_G1_L001_sequences.fastq.gz'), 'raw_forward_seqs'),
(2, join(get_mountpoint('raw_data')[0][1],
'1_s_G1_L001_sequences_barcodes.fastq.gz'),
'raw_barcodes')]
}
self.assertEqual(obs, exp)
def test_artifact_get_req_no_access(self):
obs = artifact_get_req('*****@*****.**', 1)
exp = {'status': 'error',
'message': 'User does not have access to study'}
self.assertEqual(obs, exp)
