def test_study_patch_request_tags(self):
# adding test for study_tags_request here as it makes sense to check
# that the tags were added
obs = study_tags_request()
exp = {
'status': 'success',
'message': '',
'tags': {
'admin': [],
'user': []
}
}
self.assertEqual(obs, exp)
obs = study_patch_request('*****@*****.**', 1, 'replace', '/tags',
['testA', 'testB'])
exp = {'status': 'success', 'message': ''}
self.assertEqual(obs, exp)
obs = study_tags_request()
exp = {
'status': 'success',
'message': '',
'tags': {
'admin': [],
'user': ['testA', 'testB']
}
}
self.assertEqual(obs, exp)
obs = study_patch_request('*****@*****.**', 2000, 'replace', '/tags',
['testA', 'testB'])
exp = {'message': 'Study does not exist', 'status': 'error'}
self.assertEqual(obs, exp)
def test_study_patch_request_errors(self):
# check errors
obs = study_patch_request('*****@*****.**', 1, 'no-exists', '/tags',
['testA', 'testB'])
exp = {
'message': ('Operation "no-exists" not supported. Current '
'supported operations: replace'),
'status':
'error'
}
self.assertEqual(obs, exp)
obs = study_patch_request('*****@*****.**', 1, 'replace', '/tags/na',
['testA', 'testB'])
exp = {'message': 'Incorrect path parameter', 'status': 'error'}
self.assertEqual(obs, exp)
obs = study_patch_request('*****@*****.**', 1, 'replace', '/na')
exp = {
'message': ('Attribute "na" not found. Please, check the '
'path parameter'),
'status':
'error'
}
self.assertEqual(obs, exp)
def test_study_patch_request_specimen_id_errors(self):
obs = study_patch_request('*****@*****.**', 1,
'replace', '/specimen_id_column',
'taxon_id')
exp = {'status': 'error', 'message': 'The category does not contain'
' unique values.'}
self.assertEqual(obs, exp)
obs = study_patch_request('*****@*****.**', 1,
'replace', '/specimen_id_column',
'bleep_bloop')
exp = {'status': 'error', 'message': "Category 'bleep_bloop' is not"
" present in the sample information."}
self.assertEqual(obs, exp)
def test_study_patch_request_specimen_id(self):
obs = study_patch_request('*****@*****.**', 1,
'replace', '/specimen_id_column',
'anonymized_name')
exp = {'status': 'success', 'message': 'Successfully updated '
'specimen id column'}
self.assertEqual(obs, exp)
obs = study_patch_request('*****@*****.**', 1,
'replace', '/specimen_id_column',
'host_subject_id')
exp = {'status': 'success', 'message': 'Successfully updated '
'specimen id column'}
self.assertEqual(obs, exp)
qdb.study.Study(1).specimen_id_column = None
def test_study_patch_request_errors(self):
# check errors
obs = study_patch_request(
'*****@*****.**', 1, 'no-exists', '/tags', ['testA', 'testB'])
exp = {'message': ('Operation "no-exists" not supported. Current '
'supported operations: replace'), 'status': 'error'}
self.assertEqual(obs, exp)
obs = study_patch_request(
'*****@*****.**', 1, 'replace', '/tags/na', ['testA', 'testB'])
exp = {'message': 'Incorrect path parameter', 'status': 'error'}
self.assertEqual(obs, exp)
obs = study_patch_request(
'*****@*****.**', 1, 'replace', '/na')
exp = {'message': ('Attribute "na" not found. Please, check the '
'path parameter'), 'status': 'error'}
self.assertEqual(obs, exp)
def test_study_patch_request_toggle_public_raw_download(self):
study_id = 1
study = qdb.study.Study(study_id)
obs = study_patch_request('*****@*****.**', study_id,
'replace', '/toggle_public_raw_download',
None)
exp = {'status': 'success', 'message': 'Successfully updated '
'public_raw_download'}
self.assertEqual(obs, exp)
self.assertTrue(study.public_raw_download)
obs = study_patch_request('*****@*****.**', study_id,
'replace', '/specimen_id_column',
'host_subject_id')
exp = {'status': 'error',
'message': 'User does not have access to study'}
self.assertEqual(obs, exp)
self.assertTrue(study.public_raw_download)
# returning to default status
study.public_raw_download = False
def test_study_patch_request_tags(self):
# adding test for study_tags_request here as it makes sense to check
# that the tags were added
obs = study_tags_request()
exp = {'status': 'success', 'message': '',
'tags': {'admin': [], 'user': []}}
self.assertEqual(obs, exp)
obs = study_patch_request(
'*****@*****.**', 1, 'replace', '/tags', ['testA', 'testB'])
exp = {'status': 'success', 'message': ''}
self.assertEqual(obs, exp)
obs = study_tags_request()
exp = {'status': 'success', 'message': '',
'tags': {'admin': [], 'user': ['testA', 'testB']}}
self.assertEqual(obs, exp)
obs = study_patch_request(
'*****@*****.**', 2000, 'replace', '/tags', ['testA', 'testB'])
exp = {'message': 'Study does not exist', 'status': 'error'}
self.assertEqual(obs, exp)