def run(self, config_path, as_daemon=False):
global process_snp_job
snp_table = 'snp131'
mgr = get_manager(config_path)
jobqueue = mgr.jobqueue()
# TODO add as runtime argument
snp_source = mgr.snp_source(snp_table='snp131')
snp_thread = LogExcRepeatedThread(10, process_snp_job, LOGGER_NAME, jobqueue, snp_source, snp_table)
if as_daemon:
snp_thread.daemon = True
snp_thread.start()
def run(self, config_path, as_daemon=False):
global process_reprocess_job
mgr = get_manager(config_path)
jobqueue = mgr.jobqueue()
config = mgr.pylons_config
# TODO add as runtime argument
reprocess_thread = LogExcRepeatedThread(10, process_reprocess_job, LOGGER_NAME, jobqueue, config )
if as_daemon:
reprocess_thread.daemon = True
reprocess_thread.start()
def run(self, config_path, as_daemon=False):
global process_assay_job, process_amplicon_job
mgr = get_manager(config_path)
jobqueue = mgr.jobqueue()
sequence_source = mgr.sequence_source()
tm_calc = mgr.tm_calc(mgr)
dg_calc = mgr.dg_calc(mgr)
# does the thread knock it out?
assay_thread = LogExcRepeatedThread(10, process_assay_job, LOGGER_NAME, jobqueue, tm_calc, dg_calc)
sequence_thread = LogExcRepeatedThread(15, process_amplicon_job, LOGGER_NAME, jobqueue, sequence_source, dg_calc)
if as_daemon:
assay_thread.daemon = True
sequence_thread.daemon = True
assay_thread.start()
sequence_thread.start()