def test_align_spikes():
from quickspikes.spikes import peaks
from quickspikes.tools import realign_spikes
spikes = peaks(b_recording, b_times, 200, 400)
times, aligned = realign_spikes(b_times, spikes, 3, 4)
peaks = aligned.argmax(1)
assert_true((peaks == peaks[0]).all())
def test_align_spikes():
from quickspikes.spikes import peaks
from quickspikes.tools import realign_spikes
spikes = peaks(b_recording, b_times, 200, 400)
times, aligned = realign_spikes(b_times, spikes, 3, 4)
peaks = aligned.argmax(1)
assert_true((peaks == peaks[0]).all())
def test_extract_spikes():
from quickspikes import peaks, filter_times
n_before = 20
n_after = 300
times = filter_times([t + t_peak for t in a_times], n_before, a_recording.size - n_after)
x = peaks(a_recording, times, n_before=n_before, n_after=n_after)
# last peak should get dropped
assert_equal(x.shape[0], len(a_times) - 1)
assert_equal(x.shape[1], 320)
assert_true(nx.all(a_spike == x[0,:a_spike.size]))
def test_extract_spikes():
from quickspikes import peaks, filter_times
n_before = 20
n_after = 300
times = filter_times([t + t_peak for t in a_times], n_before,
a_recording.size - n_after)
x = peaks(a_recording, times, n_before=n_before, n_after=n_after)
# last peak should get dropped
assert_equal(x.shape[0], len(a_times) - 1)
assert_equal(x.shape[1], 320)
assert_true(nx.all(a_spike == x[0, :a_spike.size]))
def test_extract_spikes_nofilter():
from quickspikes.spikes import peaks
x = peaks(a_recording, [t + t_peak for t in a_times],
n_before=20,
n_after=300)
def test_extract_spikes_nofilter(self):
from quickspikes.spikes import peaks
with self.assertRaises(ValueError):
x = peaks(a_recording, [t + t_peak for t in a_times],
n_before=20,
n_after=300)
def test_extract_spikes_nofilter():
from quickspikes.spikes import peaks
x = peaks(a_recording, [t + t_peak for t in a_times], n_before=20, n_after=300)
