def rootify(self, center_branch):
# remember the old branch:
self.root_branch = center_branch
# create a new node
center_name = center_branch.ends[0].name
center_name += "-" + center_branch.ends[1].name
center_node = node.node(center_name, self)
self.root = center_node
# give it children branches
child1 = branch.branch(center_branch.length / 2)
child1.addNode(center_node)
child1.addNode(center_branch.ends[0])
child2 = branch.branch(center_branch.length / 2)
child2.addNode(center_node)
child2.addNode(center_branch.ends[1])
center_node.child_branches.append(child1)
center_node.child_branches.append(child2)
# erase the original branch from the child nodes branch_list
for kids in center_branch.ends:
kids.branch_list.remove(center_branch)
# impose a hierarchy from the root
center_node.imposeHierarchy()
self.labelSubtrees()
self.Get_Subnodes()
self.root.Fill_Node_Dict()
def rootify(self,center_branch):
# remember the old branch:
self.root_branch = center_branch
# create a new node
center_name = center_branch.ends[0].name
center_name += "-" + center_branch.ends[1].name
center_node = node.node(center_name,self)
self.root = center_node
# give it children branches
child1 = branch.branch(center_branch.length/2)
child1.addNode(center_node)
child1.addNode(center_branch.ends[0])
child2 = branch.branch(center_branch.length/2)
child2.addNode(center_node)
child2.addNode(center_branch.ends[1])
center_node.child_branches.append(child1)
center_node.child_branches.append(child2)
# erase the original branch from the child nodes branch_list
for kids in center_branch.ends:
kids.branch_list.remove(center_branch)
# impose a hierarchy from the root
center_node.imposeHierarchy()
self.labelSubtrees()
self.Get_Subnodes()
self.root.Fill_Node_Dict()
def addBranch(self,length): self.myBranch = branch.branch(length) self.myBranch.addNode(self)
def addBranch(self, length):
self.myBranch = branch.branch(length)
self.myBranch.addNode(self)
