def __init__(self, gradient_accum_steps=5, lr=0.0005, epochs=100, n_class=2, lmb=30):
self.device = self.set_cuda_device()
self.net = EFN_Classifier("tf_efficientnet_b1_ns", n_class).to(self.device)
self.loss_function = nn.MSELoss()
self.clf_loss_function = nn.CrossEntropyLoss()
self.optimizer = Ranger(self.net.parameters(), lr=lr, weight_decay=0.999, betas=(0.9, 0.999))
self.scheduler = CosineAnnealingLR(self.optimizer, epochs * 0.5, lr * 0.0001)
self.scheduler.last_epoch = epochs
self.scaler = GradScaler()
self.epochs = epochs
self.gradient_accum_steps = gradient_accum_steps
self.lmb = lmb
def make_optimizer(model, opt, lr, weight_decay, momentum, nesterov=True):
if opt == 'SGD':
optimizer = getattr(torch.optim, opt)(model.parameters(),
lr=lr,
weight_decay=weight_decay,
momentum=momentum,
nesterov=nesterov)
elif opt == 'AMSGRAD':
optimizer = getattr(torch.optim, 'Adam')(model.parameters(),
lr=lr,
weight_decay=weight_decay,
amsgrad=True)
elif opt == 'Ranger':
optimizer = Ranger(params=filter(lambda p: p.requires_grad,
model.parameters()),
lr=lr)
elif opt == 'RMS':
optimizer = torch.optim.RMSprop(model.parameters(),
lr=lr,
alpha=0.99,
eps=1e-08,
weight_decay=weight_decay,
momentum=momentum,
centered=False)
return optimizer
def action(self):
factory = self.__outer.unit()
garrison = factory.structure_garrison()
if garrison:
direction = random.choice(list(bc.Direction))
if self.__outer._gc.can_unload(factory.id, direction):
self.__outer._gc.unload(factory.id, direction)
location = factory.location.map_location().add(direction)
unit = self.__outer._gc.sense_unit_at_location(location)
if unit: # TODO: Add other unit types' tree containers
strategy.Strategy.getInstance().removeInProduction(
unit.unit_type)
strategy.Strategy.getInstance().addUnit(unit.unit_type)
if unit.unit_type == bc.UnitType.Worker:
self.__outer._my_units.append(
Worker(unit.id, self.__outer._gc,
self.__outer._maps,
self.__outer._my_units))
elif unit.unit_type == bc.UnitType.Knight:
self.__outer._my_units.append(
Knight(unit.id, self.__outer._gc))
elif unit.unit_type == bc.UnitType.Healer:
self.__outer._my_units.append(
Healer(unit.id, self.__outer._gc,
self.__outer._maps))
elif unit.unit_type == bc.UnitType.Ranger:
self.__outer._my_units.append(
Ranger(unit.id, self.__outer._gc))
elif unit.unit_type == bc.UnitType.Mage:
self.__outer._my_units.append(
Mage(unit.id, self.__outer._gc,
self.__outer._maps))
self._status = bt.Status.SUCCESS
def __init__(self, feature_size, n_classes):
# Network architecture
super(iCaRLNet, self).__init__()
# self.feature_extractor = EfficientNet.from_pretrained('efficientnet-b2')
self.feature_extractor = resnet18()
self.feature_extractor.fc =\
nn.Linear(self.feature_extractor.fc.in_features, feature_size)
self.bn = nn.BatchNorm1d(feature_size, momentum=0.01)
self.ReLU = nn.ReLU()
self.fc = nn.Linear(feature_size, n_classes, bias=False)
self.fc2 = nn.Linear(1000, 2048)
self.n_classes = n_classes
self.n_known = 0
# List containing exemplar_sets
# Each exemplar_set is a np.array of N images
# with shape (N, C, H, W)
self.exemplar_sets = []
# Learning method
self.cls_loss = nn.CrossEntropyLoss()
self.dist_loss = nn.BCELoss()
self.optimizer = Ranger(self.parameters())
#self.optimizer = optim.SGD(self.parameters(), lr=2.0,
# weight_decay=0.00001)
# Means of exemplars
self.compute_means = True
self.exemplar_means = []
def __init__(self, device, args):
"""
Initializes a MAML few shot learning system
:param im_shape: The images input size, in batch, c, h, w shape
:param device: The device to use to use the model on.
:param args: A namedtuple of arguments specifying various hyperparameters.
"""
super(ReptileFewShotClassifier, self).__init__(device, args)
# Init slow model
config = AutoConfig.from_pretrained(args.pretrained_weights)
config.num_labels = args.num_classes_per_set
self.classifier = AutoModelForSequenceClassification.from_pretrained(
args.pretrained_weights, config=config
)
# init optimizer
self.optimizer = Ranger(
self.classifier.parameters(), lr=args.meta_learning_rate
)
self.scheduler = optim.lr_scheduler.CosineAnnealingLR(
optimizer=self.optimizer,
T_max=self.args.total_epochs * self.args.total_iter_per_epoch,
eta_min=self.args.min_learning_rate,
)
def get_optimizer(
hparams,
models,
lr=None,
):
if lr is None:
lr = hparams.lr
eps = 1e-8
parameters = []
for model in models:
parameters += list(model.parameters())
if hparams.optimizer == 'sgd':
optimizer = SGD(parameters,
lr=lr,
momentum=hparams.momentum,
weight_decay=hparams.weight_decay)
elif hparams.optimizer == 'adam':
optimizer = Adam(parameters,
lr=lr,
eps=eps,
weight_decay=hparams.weight_decay)
elif hparams.optimizer == 'radam':
optimizer = RAdam(parameters,
lr=lr,
eps=eps,
weight_decay=hparams.weight_decay)
elif hparams.optimizer == 'ranger':
optimizer = Ranger(parameters,
lr=lr,
eps=eps,
weight_decay=hparams.weight_decay)
else:
raise ValueError('optimizer not recognized!')
return optimizer
def configure_optimizers(self):
"""Optimizer configuration.
Returns:
object: Optimizer.
"""
optimizer = Ranger(self.parameters(),
lr=self.hparams['lr'],
weight_decay=1e-5)
return optimizer
def __init__(self,
gen,
dis,
dataloader_train,
dataloader_val,
gpu_id,
log_freq,
save_dir,
n_step,
optimizer='adam'):
if torch.cuda.is_available():
self.device = torch.device('cuda:' + str(gpu_id))
else:
self.device = torch.device('cpu')
self.gen = gen.to(self.device)
self.dis = dis.to(self.device)
self.dataloader_train = dataloader_train
self.dataloader_val = dataloader_val
if optimizer == 'adam':
self.optim_g = torch.optim.Adam(gen.parameters(),
lr=1e-4,
betas=(0.5, 0.999))
self.optim_d = torch.optim.Adam(dis.parameters(),
lr=1e-4,
betas=(0.5, 0.999))
elif optimizer == 'ranger':
self.optim_g = Ranger(gen.parameters())
self.optim_d = Ranger(dis.parameters())
self.criterionL1 = nn.L1Loss()
self.criterionVGG = VGGLoss()
self.criterionAdv = torch.nn.BCELoss()
self.log_freq = log_freq
self.save_dir = save_dir
self.n_step = n_step
self.step = 0
print('Generator Parameters:',
sum([p.nelement() for p in self.gen.parameters()]))
print('Discriminator Parameters:',
sum([p.nelement() for p in self.dis.parameters()]))
def parse_enemy_type(self, line):
content = line.strip()
content = content.lower()
if content == "brute":
return Brute()
elif content == "runner":
return Runner()
elif content == "ranger":
return Ranger()
else:
raise CorruptedSaveError("Save file has unknown enemy types")
def __init__(self, autoencoder: LSTMAutoEncoder, train_loader: DataLoader,
val_loader: DataLoader, cfg: Config):
self.net = autoencoder
self.train_loader = train_loader
self.val_loader = val_loader
# get from config object
output_dir = os.path.join(cfg.OUTPUT_DIR, cfg.EXPERIMENT_NAME)
os.makedirs(output_dir, exist_ok=True)
self.output_dir = output_dir
self.device = cfg.DEVICE
self.epoch_n = cfg.EPOCH_N
self.save_cycle = cfg.SAVE_CYCLE
self.verbose_cycle = cfg.VERBOSE_CYCLE
self.encoder_lr = cfg.ENCODER_LR
self.decoder_lr = cfg.DECODER_LR
self.encoder_gamma = cfg.ENCODER_GAMMA
self.decoder_gamma = cfg.DECODER_GAMMA
self.encoder_step_cycle = cfg.ENCODER_STEP_CYCLE
self.decoder_step_cycle = cfg.DECODER_STEP_CYCLE
# set optimizer and scheduler
self.encoder_optim = Ranger(params=filter(lambda p: p.requires_grad,
self.encoder.parameters()),
lr=self.encoder_lr)
self.decoder_optim = Ranger(params=filter(lambda p: p.requires_grad,
self.decoder.parameters()),
lr=self.encoder_lr)
self.encoder_stepper = StepLR(self.encoder_optim,
step_size=self.encoder_step_cycle,
gamma=self.encoder_gamma)
self.decoder_stepper = StepLR(self.decoder_optim,
step_size=self.decoder_step_cycle,
gamma=self.decoder_gamma)
self.loss = nn.MSELoss()
# for book-keeping
self.crt_epoch = 0
self.train_losses = []
self.val_losses = []
def getCharacter():
print("Warrior Mage Ranger")
character = None
answer = raw_input("Answer:")
if answer.lower() in ['w','warrior']:
character = Warrior()
if answer.lower() in ['m','mage']:
character = Mage() #Character("mage")
if answer.lower() in ['r','ranger']:
character = Ranger() #Character("ranger")
if answer.lower() in ['quit','q']:
sys.exit()
return character
def _initialize_sprites(self, level_map):
"""A method which initializes the level, creates all objects necessary for the game to run
Args:
level_map: the layout of the level in a two dimensional list [y][x]
"""
height = len(level_map)
width = len(level_map[0])
for pos_y in range(height):
for pos_x in range(width):
cell = level_map[pos_y][pos_x]
normalized_x = pos_x * self.cell_size
normalized_y = pos_y * self.cell_size
if cell == 0:
self.floors.add(Floor(normalized_x, normalized_y))
elif cell == 1:
self.walls.add(Wall(normalized_x, normalized_y))
elif cell == 2:
self.player = Player(pos_x, pos_y, normalized_x,
normalized_y)
self.floors.add(Floor(normalized_x, normalized_y))
self.level_map[pos_y][pos_x] = self.player
elif cell == 3:
self.stairs = Stairs(normalized_x, normalized_y)
elif cell == 4:
enemy = Slime(pos_x, pos_y, normalized_x, normalized_y)
self.enemies.add(enemy)
self.floors.add(Floor(normalized_x, normalized_y))
self.level_map[pos_y][pos_x] = enemy
elif cell == 5:
enemy = Ranger(pos_x, pos_y, normalized_x, normalized_y)
self.enemies.add(enemy)
self.floors.add(Floor(normalized_x, normalized_y))
self.level_map[pos_y][pos_x] = enemy
elif cell == 6:
item = Item(pos_x, pos_y, normalized_x, normalized_y)
self.floors.add(Floor(normalized_x, normalized_y))
self.objects.add(item)
self.level_map[pos_y][pos_x] = item
self.all_sprites.add(self.walls, self.floors, self.stairs,
self.objects, self.enemies, self.player)
self.refresh_enemy_queue()
self.setup_camera()
def init_optim(optim, params, lr, weight_decay, momentum):
if optim == 'adam':
return torch.optim.Adam(params, lr=lr, weight_decay=weight_decay)
elif optim == 'sgd':
return torch.optim.SGD(params,
lr=lr,
momentum=momentum,
weight_decay=weight_decay)
elif optim == 'rmsprop':
return torch.optim.RMSprop(params,
lr=lr,
momentum=momentum,
weight_decay=weight_decay)
elif optim == 'ranger':
return Ranger(params, lr=lr, weight_decay=weight_decay)
else:
raise KeyError("Unsupported optim: {}".format(optim))
def configure_optimizers(self):
optimizer = Ranger(
self.model.parameters(),
lr=self.hparams["learning_rate"],
alpha=0.5,
k=6,
N_sma_threshhold=5,
weight_decay=self.hparams["weight_decay"],
)
scheduler = lr_scheduler.ReduceLROnPlateau(
optimizer,
"min",
factor=0.5,
verbose=True,
patience=self.hparams["scheduler_pat"],
)
return [optimizer], [{"scheduler": scheduler}]
def train(train_iter, test_iter, net, feature_params, loss, device, num_epochs,
file_name):
net = net.to(device)
print("training on ", device)
batch_count = 0
best_test_acc = 0
lr = 0.001
optimizer = Ranger([{
'params': feature_params
}, {
'params': net.fc.parameters(),
'lr': lr * 10
}],
lr=lr,
weight_decay=0.0001)
# optimizer = optim.SGD([{'params': feature_params},
# {'params': net.fc.parameters(), 'lr': lr * 10}],
# lr=lr, weight_decay=0.001)
# scheduler = torch.optim.lr_scheduler.CosineAnnealingLr(optimizer, T_max=5, eta_min=4e-08)
scheduler = torch.optim.lr_scheduler.StepLR(optimizer,
step_size=10,
gamma=0.1)
for epoch in range(1, num_epochs + 1):
train_l_sum, train_acc_sum, n, start = 0.0, 0.0, 0, time.time()
scheduler.step()
for X, y in train_iter:
X = X.to(device)
y = y.to(device)
y_hat = net(X)
l = loss(y_hat, y)
optimizer.zero_grad()
l.backward()
optimizer.step()
train_l_sum += l.cpu().item()
train_acc_sum += (y_hat.argmax(dim=1) == y).sum().cpu().item()
n += y.shape[0]
batch_count += 1
test_acc = evaluate_accuracy(test_iter, net)
print(
'epoch %d, loss %.5f, train_acc %.5f, val_acc %.5f, time %.1f sec'
% (epoch, train_l_sum / batch_count, train_acc_sum / n, test_acc,
time.time() - start))
if test_acc > best_test_acc:
print('find best! save at model/%s/best.pth' % file_name)
best_test_acc = test_acc
torch.save(net.state_dict(), './model/%s/best.pth' % file_name)
with open('./result/%s.txt' % file_name, 'a') as acc_file:
acc_file.write('Epoch: %2d, acc: %.8f\n' % (epoch, test_acc))
if epoch % 10 == 0:
torch.save(net.state_dict(),
'./model/%s/checkpoint_%d.pth' % (file_name, epoch))
def configure_optimizers(self):
# With this thing we get only params, which requires grad (weights needed to train)
params = filter(lambda p: p.requires_grad, self.model.parameters())
if self.hparams.optimizer == "Ranger":
self.optimizer = Ranger(params, self.hparams.lr, weight_decay=self.hparams.wd)
elif self.hparams.optimizer == "SGD":
self.optimizer = torch.optim.SGD(params, self.hparams.lr, momentum=self.hparams.momentum, weight_decay=self.hparams.wd)
elif self.hparams.optimizer == "LARS":
self.optimizer = LARS(params, lr=self.hparams.lr, momentum=self.hparams.momentum, weight_decay=self.hparams.wd, max_epoch=self.hparams.epochs)
elif self.hparams.optimizer == "RAdam":
self.optimizer = RAdam(params, lr=self.hparams.lr, weight_decay=self.hparams.wd)
if self.hparams.scheduler == "Cosine Warm-up":
self.scheduler = torch.optim.lr_scheduler.OneCycleLR(self.optimizer, self.hparams.lr, epochs=self.hparams.epochs, steps_per_epoch=1, pct_start=self.hparams.pct_start)
if self.hparams.scheduler == "Cosine Delayed":
self.scheduler = DelayedCosineAnnealingLR(self.optimizer, self.hparams.flat_epochs, self.hparams.cosine_epochs)
sched_dict = {'scheduler': self.scheduler}
return [self.optimizer], [sched_dict]
def take_turn(self, offensive_units): #[Unit] => void
all_enemies = self.gc.sense_nearby_units_by_team(
bc.MapLocation(self.gc.planet(), 0, 0), 1000000,
Helper.get_opposing_team(self.gc.team()))
if len(all_enemies) > 0:
self.rally_point = all_enemies[0].location.map_location()
self.on_alert = True
else:
self.rally_point = self.get_default_rally_point()
self.on_alert = False
for unit in offensive_units:
soldier = self.unit_info.get(unit.id)
if soldier is None:
if unit.unit_type == bc.UnitType.Knight:
soldier = Knight(self.gc, self.intel_map, self.mov,
self.astro, Role.Attack, unit)
elif unit.unit_type == bc.UnitType.Ranger:
soldier = Ranger(self.gc, self.intel_map, self.mov,
self.astro, Role.Attack, unit)
elif unit.unit_type == bc.UnitType.Mage:
soldier = Mage(self.gc, self.intel_map, self.mov,
self.astro, Role.Attack, unit)
elif unit.unit_type == bc.UnitType.Healer:
soldier = Healer(self.gc, self.intel_map, self.mov,
self.astro, Role.Attack, unit, self)
else:
soldier = Soldier(self.gc, self.intel_map, self.mov,
self.astro, Role.Scout, unit)
soldier.set_rally_point(self.rally_point)
self.unit_info[unit.id] = soldier
if self.gc.planet() == bc.Planet.Mars:
soldier.set_role(Role.Scout)
soldier.set_rally_point(self.rally_point)
soldier.take_turn(unit, self.on_alert)
#Carry out soldier move
soldier.move_and_attack()
def take_extra_turn(self, unit): # Unit => void
if (self.gc.can_sense_unit(unit.id)):
unit = self.gc.unit(unit.id)
else:
print("Commander: Can't sense soldier !!")
#print("Commander: Overcharged unit attack heat is: " + str(unit.attack_heat()));
soldier = self.unit_info.get(unit.id)
if soldier is None:
if unit.unit_type == bc.UnitType.Knight:
soldier = Knight(self.gc, self.intel_map, self.mov, self.astro,
Role.Attack, unit)
elif unit.unit_type == bc.UnitType.Ranger:
soldier = Ranger(self.gc, self.intel_map, self.mov, self.astro,
Role.Attack, unit)
elif unit.unit_type == bc.UnitType.Mage:
soldier = Mage(self.gc, self.intel_map, self.mov, self.astro,
Role.Attack, unit)
elif unit.unit_type == bc.UnitType.Healer:
soldier = Healer(self.gc, self.intel_map, self.mov, self.astro,
Role.Attack, unit, self)
if not (soldier is None):
soldier.take_turn(unit, self.on_alert)
soldier.move_and_attack()
lr=args.lr,
betas=(.9, .999),
weight_decay=args.weight_decay)
lr_decay_gamma = 0.3
elif args.optimizer == 'lars':
from torchlars import LARS
base_optimizer = optim.SGD(model.parameters(),
lr=args.lr,
momentum=0.9,
weight_decay=args.weight_decay)
optim = LARS(base_optimizer, eps=1e-8, trust_coef=0.001)
lr_decay_gamma = 0.1
elif args.optimizer == 'ranger':
from ranger import Ranger
optim = Ranger(model.parameters(),
weight_decay=args.weight_decay,
lr=args.lr)
else:
raise NotImplementedError()
# normal_class=[args.known_normal], known_outlier_class=args.known_outlier,
print("known_normal:", args.known_normal, "known_outlier:", args.known_outlier)
# if args.lr_scheduler == 'cosine':
# scheduler = lr_scheduler.CosineAnnealingLR(optim, args.n_epochs)
# print("use cosine scheduler")
# Evaluation before training
rotation = args.shift_trans
# m_in,m_out = test(model, test_loader, train_loader, -1,return_minout=True)
# escore = test(model, test_loader, train_loader, -1)
# raise
criterion = nn.CrossEntropyLoss()
robot.playsound(SOUNDS["toy_out"])
robot.lightpattern(PATTERNS["toy_out"])
class runner:
def __init__(self, fn):
self.fn = fn
def __call__(self, robot):
global current_action
if current_action:
current_action.cancel()
current_action = self.fn(robot)
with Ranger() as robot:
# Turn on DEBUG logging
robot.debug()
robot.state["asleep"] = True
robot.show_battery()
blinking = robot.background_blink()
logger.info("Ok! Let's start!")
logger.info("Waiting for the lolette to be removed...")
robot.whenever("lolette", becomes = True).do(runner(on_lolette))
robot.whenever("lolette", becomes = False).do(runner(on_lolette_removed))
robot.whenever("scale", increase = 0.1, max_firing_freq = 0.3).do(on_toy_added)
robot.whenever("scale", decrease = 0.1, max_firing_freq = 0.3).do(on_toy_removed)
def train_fold():
#get arguments
opts=get_args()
#gpu selection
os.environ["CUDA_VISIBLE_DEVICES"] = opts.gpu_id
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
#instantiate datasets
json_path=os.path.join(opts.path,'train.json')
json=pd.read_json(json_path,lines=True)
json=json[json.signal_to_noise > opts.noise_filter]
ids=np.asarray(json.id.to_list())
error_weights=get_errors(json)
error_weights=opts.error_alpha+np.exp(-error_weights*opts.error_beta)
train_indices,val_indices=get_train_val_indices(json,opts.fold,SEED=2020,nfolds=opts.nfolds)
_,labels=get_data(json)
sequences=np.asarray(json.sequence)
train_seqs=sequences[train_indices]
val_seqs=sequences[val_indices]
train_labels=labels[train_indices]
val_labels=labels[val_indices]
train_ids=ids[train_indices]
val_ids=ids[val_indices]
train_ew=error_weights[train_indices]
val_ew=error_weights[val_indices]
#train_inputs=np.stack([train_inputs],0)
#val_inputs=np.stack([val_inputs,val_inputs2],0)
dataset=RNADataset(train_seqs,train_labels,train_ids, train_ew, opts.path)
val_dataset=RNADataset(val_seqs,val_labels, val_ids, val_ew, opts.path, training=False)
dataloader = DataLoader(dataset, batch_size=opts.batch_size,
shuffle=True, num_workers=opts.workers)
val_dataloader = DataLoader(val_dataset, batch_size=opts.batch_size*2,
shuffle=False, num_workers=opts.workers)
# print(dataset.data.shape)
# print(dataset.bpps[0].shape)
# exit()
#checkpointing
checkpoints_folder='checkpoints_fold{}'.format((opts.fold))
csv_file='log_fold{}.csv'.format((opts.fold))
columns=['epoch','train_loss',
'val_loss']
logger=CSVLogger(columns,csv_file)
#build model and logger
model=NucleicTransformer(opts.ntoken, opts.nclass, opts.ninp, opts.nhead, opts.nhid,
opts.nlayers, opts.kmer_aggregation, kmers=opts.kmers,stride=opts.stride,
dropout=opts.dropout).to(device)
optimizer=Ranger(model.parameters(), weight_decay=opts.weight_decay)
criterion=weighted_MCRMSE
#lr_schedule=lr_AIAYN(optimizer,opts.ninp,opts.warmup_steps,opts.lr_scale)
# Mixed precision initialization
opt_level = 'O1'
#model, optimizer = amp.initialize(model, optimizer, opt_level=opt_level)
model = nn.DataParallel(model)
pretrained_df=pd.read_csv('pretrain.csv')
#print(pretrained_df.epoch[-1])
model.load_state_dict(torch.load('pretrain_weights/epoch{}.ckpt'.format(int(pretrained_df.iloc[-1].epoch))))
pytorch_total_params = sum(p.numel() for p in model.parameters())
print('Total number of paramters: {}'.format(pytorch_total_params))
#distance_mask=get_distance_mask(107)
#distance_mask=torch.tensor(distance_mask).float().to(device).reshape(1,107,107)
#print("Starting training for fold {}/{}".format(opts.fold,opts.nfolds))
#training loop
cos_epoch=int(opts.epochs*0.75)-1
lr_schedule=torch.optim.lr_scheduler.CosineAnnealingLR(optimizer,(opts.epochs-cos_epoch)*len(dataloader))
for epoch in range(opts.epochs):
model.train(True)
t=time.time()
total_loss=0
optimizer.zero_grad()
train_preds=[]
ground_truths=[]
step=0
for data in dataloader:
#for step in range(1):
step+=1
#lr=lr_schedule.step()
lr=get_lr(optimizer)
#print(lr)
src=data['data'].to(device)
labels=data['labels']
bpps=data['bpp'].to(device)
#print(bpps.shape[1])
# bpp_selection=np.random.randint(bpps.shape[1])
# bpps=bpps[:,bpp_selection]
# src=src[:,bpp_selection]
# print(bpps.shape)
# print(src.shape)
# exit()
# print(bpps.shape)
# exit()
#src=mutate_rna_input(src,opts.nmute)
#src=src.long()[:,np.random.randint(2)]
labels=labels.to(device)#.float()
output=model(src,bpps)
ew=data['ew'].to(device)
#print(output.shape)
#print(labels.shape)
loss=criterion(output[:,:68],labels,ew).mean()
# with amp.scale_loss(loss, optimizer) as scaled_loss:
# scaled_loss.backward()
loss.backward()
torch.nn.utils.clip_grad_norm_(model.parameters(), 1)
optimizer.step()
optimizer.zero_grad()
total_loss+=loss
print ("Epoch [{}/{}], Step [{}/{}] Loss: {:.3f} Lr:{:.6f} Time: {:.1f}"
.format(epoch+1, opts.epochs, step+1, len(dataloader), total_loss/(step+1) , lr,time.time()-t),end='\r',flush=True) #total_loss/(step+1)
#break
if epoch > cos_epoch:
lr_schedule.step()
print('')
train_loss=total_loss/(step+1)
#recon_acc=np.sum(recon_preds==true_seqs)/len(recon_preds)
torch.cuda.empty_cache()
if (epoch+1)%opts.val_freq==0 and epoch > cos_epoch:
#if (epoch+1)%opts.val_freq==0:
val_loss=validate(model,device,val_dataloader,batch_size=opts.batch_size)
to_log=[epoch+1,train_loss,val_loss,]
logger.log(to_log)
if (epoch+1)%opts.save_freq==0:
save_weights(model,optimizer,epoch,checkpoints_folder)
# if epoch == cos_epoch:
# print('yes')
get_best_weights_from_fold(opts.fold)
model = GCVAE(
args,
n_r,
n_e,
dataset,
).to(device)
elif model_name == 'GCVAE2':
model = GCVAE2(args, n_r, n_e, dataset).to(device)
elif model_name == 'GVAE':
model = GVAE(args, n_r, n_e, dataset).to(device)
else:
raise ValueError('{} not defined!'.format(model_name))
optimizer = Ranger(model.parameters(),
lr=args['lr'],
k=args['k'] if 'k' in args else 9,
betas=(.95, 0.999),
use_gc=True,
gc_conv_only=False)
wandb.watch(model)
# Load model
if args['load_model']:
# model.load_state_dict(torch.load(model_path, map_location=torch.device(device))['model_state_dict'])
model.load_state_dict(
torch.load(args['load_model_path'],
map_location=torch.device(device))['model_state_dict'])
print('Saved model loaded.')
# Train model
if args['train']:
train_eval_vae(batch_size, args['epochs'], train_set[:limit],
def train(args):
# get configs
epochs = args.epoch
dim = args.dim
lr = args.lr
weight_decay = args.l2
head_num = args.head_num
device = args.device
act = args.act
fusion = args.fusion
beta = args.beta
alpha = args.alpha
use_self = args.use_self
agg = args.agg
model = DATE(leaf_num,importer_size,item_size,\
dim,head_num,\
fusion_type=fusion,act=act,device=device,\
use_self=use_self,agg_type=agg,
).to(device)
model = nn.DataParallel(model,device_ids=[0,1])
# initialize parameters
for p in model.parameters():
if p.dim() > 1:
nn.init.xavier_uniform_(p)
# optimizer & loss
optimizer = Ranger(model.parameters(), weight_decay=weight_decay,lr=lr)
cls_loss_func = nn.BCELoss()
reg_loss_func = nn.MSELoss()
# save best model
global_best_score = 0
model_state = None
# early stop settings
stop_rounds = 3
no_improvement = 0
current_score = None
for epoch in range(epochs):
for step, (batch_feature,batch_user,batch_item,batch_cls,batch_reg) in enumerate(train_loader):
model.train() # prep to train model
batch_feature,batch_user,batch_item,batch_cls,batch_reg = \
batch_feature.to(device), batch_user.to(device), batch_item.to(device),\
batch_cls.to(device), batch_reg.to(device)
batch_cls,batch_reg = batch_cls.view(-1,1), batch_reg.view(-1,1)
# model output
classification_output, regression_output, hidden_vector = model(batch_feature,batch_user,batch_item)
# FGSM attack
adv_vector = fgsm_attack(model,cls_loss_func,hidden_vector,batch_cls,0.01)
adv_output = model.module.pred_from_hidden(adv_vector)
# calculate loss
adv_loss_func = nn.BCELoss(weight=batch_cls)
adv_loss = beta * adv_loss_func(adv_output,batch_cls)
cls_loss = cls_loss_func(classification_output,batch_cls)
revenue_loss = alpha * reg_loss_func(regression_output, batch_reg)
loss = cls_loss + revenue_loss + adv_loss
optimizer.zero_grad()
loss.backward()
optimizer.step()
if (step+1) % 1000 ==0:
print("CLS loss:%.4f, REG loss:%.4f, ADV loss:%.4f, Loss:%.4f"\
%(cls_loss.item(),revenue_loss.item(),adv_loss.item(),loss.item()))
# evaluate
model.eval()
print("Validate at epoch %s"%(epoch+1))
y_prob, val_loss = model.module.eval_on_batch(valid_loader)
y_pred_tensor = torch.tensor(y_prob).float().to(device)
best_threshold, val_score, roc = torch_threshold(y_prob,xgb_validy)
overall_f1, auc, precisions, recalls, f1s, revenues = metrics(y_prob,xgb_validy,revenue_valid)
select_best = np.mean(f1s)
print("Over-all F1:%.4f, AUC:%.4f, F1-top:%.4f" % (overall_f1, auc, select_best) )
print("Evaluate at epoch %s"%(epoch+1))
y_prob, val_loss = model.module.eval_on_batch(test_loader)
y_pred_tensor = torch.tensor(y_prob).float().to(device)
overall_f1, auc, precisions, recalls, f1s, revenues = metrics(y_prob,xgb_testy,revenue_test,best_thresh=best_threshold)
print("Over-all F1:%.4f, AUC:%.4f, F1-top:%.4f" %(overall_f1, auc, np.mean(f1s)) )
# save best model
if select_best > global_best_score:
global_best_score = select_best
torch.save(model,model_path)
# early stopping
if current_score == None:
current_score = select_best
continue
if select_best < current_score:
current_score = select_best
no_improvement += 1
if no_improvement >= stop_rounds:
print("Early stopping...")
break
if select_best > current_score:
no_improvement = 0
current_score = None
def init_model(
self,
dropout,
embed_dim=400,
vector_path=None,
word_hidden=None,
sent_hidden=None,
word_encoder="gru",
sent_encoder="gru",
dim_caps=16,
num_caps=25,
num_compressed_caps=100,
dropout_caps=0.2,
lambda_reg_caps=0.0005,
pos_weight=None,
nhead_doc=5,
ulmfit_pretrained_path=None,
dropout_factor_ulmfit=1.0,
binary_class=True,
KDE_epsilon=0.05,
num_cycles_lr=5,
lr_div_factor=10,
):
self.embed_size = embed_dim
self.word_hidden = word_hidden
self.sent_hidden = sent_hidden
self.dropout = dropout
self.word_encoder = word_encoder
self.sent_encoder = sent_encoder
self.ulmfit_pretrained_path = ulmfit_pretrained_path
self.binary_class = binary_class
self.num_cycles_lr = num_cycles_lr
self.lr_div_factor = lr_div_factor
# Initialize model and load pretrained weights if given
self.logger.info("Building model...")
if self.model_name.lower() == "han":
self.model = HAN(
self.vocab_size,
embed_dim,
word_hidden,
sent_hidden,
self.num_labels,
dropout=dropout,
word_encoder=word_encoder,
sent_encoder=sent_encoder,
ulmfit_pretrained_path=ulmfit_pretrained_path,
dropout_factor_ulmfit=dropout_factor_ulmfit,
) # TODO: also adapt for other models
elif self.model_name.lower() == "hgrulwan":
self.model = HGRULWAN(
self.vocab_size,
embed_dim,
word_hidden,
sent_hidden,
self.num_labels,
dropout=dropout,
word_encoder=word_encoder,
ulmfit_pretrained_path=ulmfit_pretrained_path,
dropout_factor_ulmfit=dropout_factor_ulmfit,
)
elif self.model_name.lower() == "hcapsnet":
self.model = HCapsNet(
self.vocab_size,
embed_dim,
word_hidden,
sent_hidden,
self.num_labels,
dropout=dropout,
word_encoder=word_encoder,
sent_encoder=sent_encoder,
dropout_caps=dropout_caps,
dim_caps=dim_caps,
num_caps=num_caps,
num_compressed_caps=num_compressed_caps,
ulmfit_pretrained_path=ulmfit_pretrained_path,
dropout_factor_ulmfit=dropout_factor_ulmfit,
lambda_reg_caps=lambda_reg_caps,
binary_class=binary_class,
KDE_epsilon=KDE_epsilon,
)
elif self.model_name.lower() == "HierarchicalAttentionCapsNet".lower():
self.model = HierarchicalAttentionCapsNet(
num_tokens=self.vocab_size,
embed_size=embed_dim,
word_hidden=word_hidden,
num_classes=self.num_labels,
dropout=dropout,
word_encoder=word_encoder,
sent_encoder=sent_encoder,
dropout_caps=dropout_caps,
dim_caps=dim_caps,
num_caps=num_caps,
num_compressed_caps=num_compressed_caps,
nhead_doc=nhead_doc,
ulmfit_pretrained_path=ulmfit_pretrained_path,
dropout_factor_ulmfit=dropout_factor_ulmfit,
lambda_reg_caps=lambda_reg_caps,
binary_class=binary_class,
KDE_epsilon=KDE_epsilon,
)
if binary_class:
# Initialize training attributes
if "caps" in self.model_name.lower():
# self.criterion = FocalLoss()
self.criterion = MarginLoss(0.9, 0.1, 0.5, True)
# self.criterion = torch.nn.BCELoss()
else:
if pos_weight:
pos_weight = torch.tensor(pos_weight).to(self.device)
self.criterion = torch.nn.BCEWithLogitsLoss(
pos_weight=pos_weight, reduction="mean"
)
else:
if "caps" in self.model_name.lower():
self.criterion = MarginLoss(0.9, 0.1, 0.5, False)
# torch.nn.CrossEntropyLoss(reduction='mean')
else:
self.criterion = torch.nn.CrossEntropyLoss(reduction="mean")
# Load embeddings
if word_encoder.lower() != "ulmfit":
# initialize optimizer
params = self.model.parameters()
# get word embeddings
vectors = fasttext.load_model(vector_path)
embed_table = get_embedding(vectors, self.word_to_idx, embed_dim)
self.model.set_embedding(embed_table)
else:
# intialize per-layer lr for ULMFiT
params = [
{
"params": self.model.sent_encoder.word_encoder.parameters(),
"lr": self.lr / self.lr_div_factor,
},
{"params": self.model.caps_classifier.parameters()},
{"params": self.model.doc_encoder.parameters()},
{"params": self.model.sent_encoder.weight_W_word.parameters()},
{"params": self.model.sent_encoder.weight_proj_word},
]
self.optimizer = Ranger(params, lr=self.lr, betas=(0.95,0.99), eps=1e-6)
self.scheduler = torch.optim.lr_scheduler.CosineAnnealingLR(
self.optimizer,
T_max=self.steps_per_epoch * self.num_epochs
)
# self.optimizer = RAdam(params, lr=self.lr, weight_decay=self.weight_decay)
# self.optimizer = AdamW(params, lr=self.lr, weight_decay=self.weight_decay)
#
# self.scheduler = get_cosine_with_hard_restarts_schedule_with_warmup(
# self.optimizer,
# num_warmup_steps=self.steps_per_epoch,
# num_training_steps=self.steps_per_epoch * self.num_epochs,
# num_cycles=self.num_cycles_lr,
# )
if self.keep_ulmfit_frozen: # Freeze ulmfit completely
self.model.sent_encoder.word_encoder.freeze_to(-1)
if torch.cuda.device_count() > 1:
print("Let's use", torch.cuda.device_count(), "GPUs!")
self.model = MyDataParallel(self.model)
self.model.to(self.device)
"""
if args.resume:
load_name = os.path.join("./model/ATCDNet_2020-03-02_20.pth")
print("loading checkpoint %s" %(laod_name))
net = torch.load(load_name)
arg.start_epoch = net['epoch']
"""
#if arg.pretrain:
# print("The ckp has been loaded sucessfully ")
#net = torch.load("./model/MSAANet_2020-03-31_87.pth") # load the pretrained model
#criterion = FocalLoss2d().to(device)
criterion = torch.nn.BCELoss().to(device)
#criterion = torch.nn.CrossEntropyLoss().to(device)
train_loader, val_loader = get_dataset_loaders(5, batch_size)
#opt = torch.optim.SGD(net.parameters(), lr=learning_rate)
opt = Ranger(net.parameters(),lr=learning_rate)
today=str(datetime.date.today())
logger = get_log(model_name + today +'_log.txt')
#scheduler = torch.optim.lr_scheduler.CosineAnnealingLR(opt, T_max=5,eta_min=4e-08)
#scheduler = LR_Scheduler(args.lr_scheduler, args.lr,
# args.n_epoch, len(train_loader), logger=logger,
# lr_step=args.lr_step)
#
scheduler = PolynomialLRDecay(opt, max_decay_steps=100, end_learning_rate=0.0001, power=2.0)
for epoch in range(num_epochs):
logger.info("Epoch: {}/{}".format(epoch + 1, num_epochs))
scheduler.step()
#scheduler(opt,i,.step()
def configure_optimizers(self):
opt = Ranger(self.parameters(), lr=self.lr)
return opt
def __init__(self,
model,
optim,
loss,
lr,
bs,
name,
shape=512,
crop_type=0):
self.num_workers = 4
self.batch_size = {"train": bs, "val": 1}
self.accumulation_steps = bs // self.batch_size['train']
self.lr = lr
self.loss = loss
self.optim = optim
self.num_epochs = 0
self.best_dice = 0.
self.best_lb_metric = 0.
self.phases = ["train", "val"]
self.device = torch.device("cuda:0")
torch.set_default_tensor_type("torch.cuda.FloatTensor")
self.net = model
self.name = name
self.do_cutmix = True
if self.loss == 'BCE':
self.criterion = torch.nn.BCEWithLogitsLoss()
elif self.loss == 'BCE+DICE':
self.criterion = BCEDiceLoss(threshold=None) #MODIFIED
elif self.loss == 'TVERSKY':
self.criterion = Tversky()
elif self.loss == 'Dice' or self.loss == 'DICE':
self.criterion = DiceLoss()
elif self.loss == 'BCE+DICE+JACCARD':
self.criterion = BCEDiceJaccardLoss(threshold=None)
else:
raise (Exception(
f'{self.loss} is not recognized. Please provide a valid loss function.'
))
# Optimizers
if self.optim == 'Over9000':
self.optimizer = Over9000(self.net.parameters(), lr=self.lr)
elif self.optim == 'Adam':
self.optimizer = torch.optim.Adam(self.net.parameters(),
lr=self.lr)
elif self.optim == 'RAdam':
self.optimizer = Radam(self.net.parameters(), lr=self.lr)
elif self.optim == 'Ralamb':
self.optimizer = Ralamb(self.net.parameters(), lr=self.lr)
elif self.optim == 'Ranger':
self.optimizer = Ranger(self.net.parameters(), lr=self.lr)
elif self.optim == 'LookaheadAdam':
self.optimizer = LookaheadAdam(self.net.parameters(), lr=self.lr)
else:
raise (Exception(
f'{self.optim} is not recognized. Please provide a valid optimizer function.'
))
self.scheduler = ReduceLROnPlateau(self.optimizer,
factor=0.5,
mode="min",
patience=4,
verbose=True,
min_lr=1e-5)
self.net = self.net.to(self.device)
cudnn.benchmark = True
self.dataloaders = {
phase: provider(
phase=phase,
shape=shape,
crop_type=crop_type,
batch_size=self.batch_size[phase],
num_workers=self.num_workers if phase == 'train' else 0,
)
for phase in self.phases
}
self.losses = {phase: [] for phase in self.phases}
self.iou_scores = {phase: [] for phase in self.phases}
self.dice_scores = {phase: [] for phase in self.phases}
self.F2_scores = {phase: [] for phase in self.phases}
self.lb_metric = {phase: [] for phase in self.phases}
class Brain(object):
"""
High-level model logic and tuning nuggets encapsulated.
Based on efficientNet: https://arxiv.org/abs/1905.11946
fine tuning the efficientnet for classification and object detection
in this implementation, no weights are frozen
ideally, batchnorm layers can be frozen for marginal training speed increase
"""
def __init__(self, gradient_accum_steps=5, lr=0.0005, epochs=100, n_class=2, lmb=30):
self.device = self.set_cuda_device()
self.net = EFN_Classifier("tf_efficientnet_b1_ns", n_class).to(self.device)
self.loss_function = nn.MSELoss()
self.clf_loss_function = nn.CrossEntropyLoss()
self.optimizer = Ranger(self.net.parameters(), lr=lr, weight_decay=0.999, betas=(0.9, 0.999))
self.scheduler = CosineAnnealingLR(self.optimizer, epochs * 0.5, lr * 0.0001)
self.scheduler.last_epoch = epochs
self.scaler = GradScaler()
self.epochs = epochs
self.gradient_accum_steps = gradient_accum_steps
self.lmb = lmb
@staticmethod
def set_cuda_device():
if torch.cuda.is_available():
device = torch.device("cuda:0")
logging.info(f"Running on {torch.cuda.get_device_name()}")
else:
device = torch.device("cpu")
logging.info("Running on a CPU")
return device
def run_training_loop(self, train_dataloader, valid_dataloader, model_filename):
best_loss = float("inf")
for epoch in range(self.epochs):
if epoch != 0 and epoch > 0.5 * self.epochs: # cosine anneal the last 50% of epochs
self.scheduler.step()
logging.info(f"Epoch {epoch+1}")
logging.info("Training")
train_losses, train_accuracies, train_miou = self.forward_pass(train_dataloader, train=True)
logging.info("Validating")
val_losses, val_accuracies, val_miou = self.forward_pass(valid_dataloader)
logging.info(
f"Training accuracy: {sum(train_accuracies)/len(train_accuracies):.2f}"
f" | Training loss: {sum(train_losses)/len(train_losses):.2f}"
f" | Training mIoU: {sum(train_miou)/len(train_miou):.2f}"
)
logging.info(
f"Validation accuracy: {sum(val_accuracies)/len(val_accuracies):.2f}"
f" | Validation loss: {sum(val_losses)/len(val_losses):.2f}"
f" | Validation mIoU: {sum(val_miou)/len(val_miou):.2f}"
)
epoch_val_loss = sum(val_losses) / len(val_losses)
if best_loss > epoch_val_loss:
best_loss = epoch_val_loss
torch.save(self.net.state_dict(), model_filename)
logging.info(f"Saving with loss of {epoch_val_loss}, improved over previous {best_loss}")
def bbox_iou(self, true_boxes, pred_boxes):
iou_list = []
for true_box, pred_box in zip(true_boxes, pred_boxes):
x_left = max(true_box[0], pred_box[0]).item()
y_top = max(true_box[1], pred_box[1]).item()
x_right = min(true_box[2], pred_box[2]).item()
y_bottom = min(true_box[3], pred_box[3]).item()
if x_right < x_left or y_bottom < y_top:
return 0.0
overlap = (x_right - x_left) * (y_bottom - y_top)
true_box_area = (true_box[2] - true_box[0]) * (true_box[3] - true_box[1])
pred_box_area = (pred_box[2] - pred_box[0]) * (pred_box[3] - pred_box[1])
iou = overlap / float(true_box_area + pred_box_area - overlap)
iou_list.append(iou)
iou = torch.tensor(iou)
iou = torch.mean(iou)
return iou
def draw_boxes(self, images, bboxes, labels):
label_dict = {0: "Cat", 1: "Dog"}
for batch in zip(images, bboxes, labels):
cv2.destroyAllWindows()
image, bbox, label = batch[0].cpu().numpy(), batch[1].cpu().numpy(), torch.argmax(batch[2]).cpu().item()
image = np.rollaxis(image, 0, 3)
image = ((image - image.min()) * (1 / (image.max() - image.min()) * 255)).astype("uint8")
image = cv2.UMat(image)
cv2.rectangle(image, (bbox[0], bbox[1]), (bbox[2], bbox[3]), (0, 255, 0), thickness=2)
cv2.putText(
image,
f"{label_dict[label]}",
(bbox[1], bbox[3]),
cv2.FONT_HERSHEY_SIMPLEX,
0.5,
(0, 255, 0),
1,
cv2.LINE_AA,
)
cv2.imshow("test", image)
cv2.waitKey(1)
sleep(1)
cv2.destroyAllWindows()
def forward_pass(self, dataloader, draw=False, train=False):
def get_loss(inputs, bbox_labels, clf_labels):
label_outputs, bbox_outputs = self.net(inputs)
bbox_loss = self.loss_function(bbox_outputs, bbox_labels)
clf_loss = self.clf_loss_function(label_outputs, clf_labels)
loss = torch.mean(bbox_loss + clf_loss * self.lmb)
return loss, label_outputs, bbox_outputs
if train:
self.net.train()
else:
self.net.eval()
losses = []
accuracies = []
miou = []
for step, batch in enumerate(dataloader):
inputs = batch[0].to(self.device).float()
labels = batch[1].to(self.device).float()
# splitting labels for separate loss calculation
bbox_labels = labels[:, :4]
clf_labels = labels[:, 4:].long()
clf_labels = clf_labels[:, 0]
with autocast():
if train:
loss, label_outputs, bbox_outputs = get_loss(inputs, bbox_labels, clf_labels)
self.scaler.scale(loss).backward()
else:
with torch.no_grad():
loss, label_outputs, bbox_outputs = get_loss(inputs, bbox_labels, clf_labels)
if draw:
self.draw_boxes(inputs, bbox_outputs, label_outputs)
matches = [torch.argmax(i) == j for i, j in zip(label_outputs, clf_labels)]
acc = matches.count(True) / len(matches)
iou = self.bbox_iou(bbox_labels, bbox_outputs)
miou.append(iou)
losses.append(loss)
accuracies.append(acc)
if train and (step + 1) % self.gradient_accum_steps == 0:
# gradient accumulation to train with bigger effective batch size
# with less memory use
# fp16 is used to speed up training and reduce memory consumption
self.scaler.step(self.optimizer)
self.scaler.update()
self.optimizer.zero_grad()
logging.info(
f"Step {step} of {len(dataloader)},\t"
f"Accuracy: {sum(accuracies)/len(accuracies):.2f},\t"
f"mIoU: {sum(miou)/len(miou):.2f},\t"
f"Loss: {sum(losses)/len(losses):.2f}"
)
return losses, accuracies, miou
def main():
SEED = 1234
torch.manual_seed(SEED)
torch.cuda.manual_seed(SEED)
torch.backends.cudnn.deterministic = True
TEXT = data.Field(lower=True, batch_first=True, tokenize='spacy')
LABEL = data.LabelField(dtype=torch.float)
train_data, test_data = datasets.IMDB.splits(TEXT,
LABEL,
root='/tmp/imdb/')
train_data, valid_data = train_data.split(split_ratio=0.8,
random_state=random.seed(SEED))
TEXT.build_vocab(train_data,
vectors=GloVe(name='6B', dim=100, cache='/tmp/glove/'),
unk_init=torch.Tensor.normal_)
LABEL.build_vocab(train_data)
BATCH_SIZE = 64
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
train_iterator, valid_iterator, test_iterator = data.BucketIterator.splits(
(train_data, valid_data, test_data),
batch_size=BATCH_SIZE,
device=device)
vocab_size, embedding_dim = TEXT.vocab.vectors.shape
class SentimentAnalysisCNN(nn.Module):
def __init__(self,
vocab_size,
embedding_dim,
kernel_sizes,
num_filters,
num_classes,
d_prob,
mode,
use_drop=False):
"""
Args:
vocab_size : int - size of vocabulary in dictionary
embedding_dim : int - the dimension of word embedding vector
kernel_sizes : list of int - sequence of sizes of kernels in this architecture
num_filters : how many filters used for each layers
num_classes : int - number of classes to classify
d_prob: probability for dropout layer
mode: one of :
static : pretrained weights, non-trainable
nonstatic : pretrained weights, trainable
rand : random init weights
use_drop : use drop or not in this class
"""
super(SentimentAnalysisCNN, self).__init__()
self.vocab_size = vocab_size
self.embedding_dim = embedding_dim
self.kernel_sizes = kernel_sizes
self.num_filters = num_filters
self.num_classes = num_classes
self.d_prob = d_prob
self.mode = mode
self.embedding = nn.Embedding(vocab_size,
embedding_dim,
padding_idx=1)
self.load_embeddings()
self.conv = nn.ModuleList([
nn.Sequential(
nn.Conv1d(in_channels=embedding_dim,
out_channels=num_filters,
kernel_size=k,
stride=1), nn.Dropout(p=0.5, inplace=True))
for k in kernel_sizes
])
self.use_drop = use_drop
if self.use_drop:
self.dropout = nn.Dropout(d_prob)
self.fc = nn.Linear(len(kernel_sizes) * num_filters, num_classes)
def forward(self, x):
batch_size, sequence_length = x.shape
x = self.embedding(x).transpose(1, 2)
x = [F.relu(conv(x)) for conv in self.conv]
x = [F.max_pool1d(c, c.size(-1)).squeeze(dim=-1) for c in x]
x = torch.cat(x, dim=1)
if self.use_drop:
x = self.fc(self.dropout(x))
x = self.fc(x)
return torch.sigmoid(x).squeeze()
def load_embeddings(self):
if 'static' in self.mode:
self.embedding.weight.data.copy_(TEXT.vocab.vectors)
if 'non' not in self.mode:
self.embedding.weight.data.requires_grad = False
print(
'Loaded pretrained embeddings, weights are not trainable.'
)
else:
self.embedding.weight.data.requires_grad = True
print(
'Loaded pretrained embeddings, weights are trainable.')
elif self.mode == 'rand':
print('Randomly initialized embeddings are used.')
else:
raise ValueError(
'Unexpected value of mode. Please choose from static, nonstatic, rand.'
)
model = SentimentAnalysisCNN(
vocab_size=vocab_size, #pkgmodel
embedding_dim=embedding_dim,
kernel_sizes=[3, 4, 5],
num_filters=100,
num_classes=1,
d_prob=0.5,
mode='static')
model.to(device)
## switch back and forth the two optimizers
# optimizer = torch.optim.Adam(model.parameters(), lr=1e-4, weight_decay=1e-3)
## optimizer provide better performance but get overfitting quickly
optimizer = Ranger(model.parameters(), weight_decay=0.1)
criterion = nn.BCELoss()
def process_function(engine, batch):
model.train()
optimizer.zero_grad()
x, y = batch.text, batch.label
y_pred = model(x)
loss = criterion(y_pred, y)
loss.backward()
optimizer.step()
return loss.item()
def eval_function(engine, batch):
model.eval()
with torch.no_grad():
x, y = batch.text, batch.label
y_pred = model(x)
return y_pred, y
trainer = Engine(process_function)
train_evaluator = Engine(eval_function)
validation_evaluator = Engine(eval_function)
RunningAverage(output_transform=lambda x: x).attach(trainer, 'loss')
def thresholded_output_transform(output):
y_pred, y = output
y_pred = torch.round(y_pred)
return y_pred, y
Accuracy(output_transform=thresholded_output_transform).attach(
train_evaluator, 'accuracy')
Loss(criterion).attach(train_evaluator, 'bce')
Accuracy(output_transform=thresholded_output_transform).attach(
validation_evaluator, 'accuracy')
Loss(criterion).attach(validation_evaluator, 'bce')
pbar = ProgressBar(persist=True, bar_format="")
pbar.attach(trainer, ['loss'])
def score_function(engine):
val_loss = engine.state.metrics['bce']
return -val_loss
handler = EarlyStopping(patience=5,
score_function=score_function,
trainer=trainer)
validation_evaluator.add_event_handler(Events.COMPLETED, handler)
@trainer.on(Events.EPOCH_COMPLETED)
def log_training_results(engine):
train_evaluator.run(train_iterator)
metrics = train_evaluator.state.metrics
avg_accuracy = metrics['accuracy']
avg_bce = metrics['bce']
pbar.log_message(
"Training Results - Epoch: {} Avg accuracy: {:.2f} Avg loss: {:.2f}"
.format(engine.state.epoch, avg_accuracy, avg_bce))
@trainer.on(Events.EPOCH_COMPLETED)
def log_validation_results(engine):
validation_evaluator.run(valid_iterator)
metrics = validation_evaluator.state.metrics
avg_accuracy = metrics['accuracy']
avg_bce = metrics['bce']
pbar.log_message(
"Validation Results - Epoch: {} Avg accuracy: {:.2f} Avg loss: {:.2f}"
.format(engine.state.epoch, avg_accuracy, avg_bce))
pbar.n = pbar.last_print_n = 0
checkpointer = ModelCheckpoint('/tmp/models',
'textcnn_ranger_wd_0_1',
save_interval=1,
n_saved=2,
create_dir=True,
save_as_state_dict=True,
require_empty=False)
trainer.add_event_handler(Events.EPOCH_COMPLETED, checkpointer,
{'textcnn_ranger_wd_0_1': model})
# trainer.add_event_handler(Events.EPOCH_COMPLETED, log_validation_results)
trainer.run(train_iterator, max_epochs=20)
# Tree trees = [] start_time = time.time() fps = 60 frame_time = 1.0/fps # Ranger # Button sensibility when planting button_time = 30 plant_time = 30 # Speed and movement unit = 1 ranger_speed = 10 # The ranger object ranger = Ranger(window_h, window_w, ranger_speed) # Cutter cutter_time = 50 tree_cutting_time = 50 cutter_speed = 4 cutter = [] # Difficulty level cutter_difficulty = 300 # Draw background screen.fill(bg_color) # Draw everything on top of that number_trees = 80 while number_trees != 0:
def __init__(self,
model,
path,
img_ext,
mask_ext,
save_path,
optim,
loss,
lr,
bs,
name,
shape=256,
crop_type=0):
self.num_workers = 4
self.save_path = save_path
self.batch_size = {"train": bs, "val": 1}
self.accumulation_steps = bs // self.batch_size['train']
self.lr = lr
self.path = path
self.img_ext = img_ext
self.mask_ext = mask_ext
self.loss = loss
self.optim = optim
self.num_epochs = 0
self.best_val_loss = 1
self.best_val_dice = 0
self.best_val_iou = 0
self.phases = ["train", "val"]
self.device = torch.device("cuda:0")
torch.set_default_tensor_type("torch.cuda.FloatTensor")
self.net = model
self.name = name
self.do_cutmix = True
self.loss_classification = torch.nn.CrossEntropyLoss()
if self.loss == 'BCE+DICE+IOU':
self.criterion = BCEDiceJaccardLoss(threshold=None)
else:
raise (Exception(
f'{self.loss} is not recognized. Please provide a valid loss function.'
))
if self.optim == 'Ranger':
self.optimizer = Ranger(self.net.parameters(), lr=self.lr)
elif self.optim == 'LookaheadAdam':
self.optimizer = LookaheadAdam(self.net.parameters(), lr=self.lr)
else:
raise (Exception(
f'{self.optim} is not recognized. Please provide a valid optimizer function.'
))
self.scheduler = ReduceLROnPlateau(self.optimizer,
factor=0.5,
mode="min",
patience=4,
verbose=True,
min_lr=1e-5)
self.net = self.net.to(self.device)
cudnn.benchmark = True
self.dataloaders = {
phase: provider(
phase=phase,
path=self.path,
img_ext=self.img_ext,
mask_ext=self.mask_ext,
num_workers=0,
)
for phase in self.phases
}
self.losses = {phase: [] for phase in self.phases}
self.dice_scores = {phase: [] for phase in self.phases}
self.iou_scores = {phase: [] for phase in self.phases}
self.f2_scores = {phase: [] for phase in self.phases}
