def ondtnan(self, mo):
dt_N=mo.group(1)
dt_attr_name=mo.group(2)
# check for self.sequence
if hasattr(self, 'sequence') and len(self.sequence) > 0:
self.add_seq()
# init new dt if necessary:
# if not hasattr(self, 'current_target') or self.current_target.N != dt_N:
if not hasattr(self.current_graph, 'N') or self.current_graph.N != dt_N:
target=rdf.graph()
target.N=dt_N
self.dc.add_triple(rdf.triple(sub=self.id, pred='has_target', obj=target))
self.current_graph=target
self.current_attr_name=dt_attr_name
def add_seq(self):
edge=rdf.triple(sub=self.current_attr_name, pred=self.sequence_desc, obj=self.sequence)
self.current_graph.add_triple(edge)
def onvalue(self, mo):
value=mo.group(1)
trip=rdf.triple(sub=self.current_sub, pred=self.current_attr_name, obj=value)
self.current_graph.add_triple(trip)
def on_line3(self, row):
self.g.add_triple(rdf.triple(sub=row[0], pred=row[1], obj=row[2]))
def on_line6(self, row):
drug=rdf.triple(sub=row[3], pred=row[4], obj=row[5])
target=rdf.triple(sub=row[0], pred=row[1], obj=drug)
g.add_triple(target)
def on_line4(self, row):
self.g.add_triple(rdf.triple(sub=row[0], pred=row[1], obj=row[3]))
self.g.add_triple(rdf.triple(sub=row[3], pred='name', obj=row[2]))
