def _get_section_data(self, patient_model, context_model, raw=False):
# we need raw values for initial data
# display values for the read only
assert not self.section.allow_multiple
pairs = []
data = patient_model.get_dynamic_data(self.review.registry,
collection="cdes",
context_id=context_model.pk,
flattened=True)
def get_field_value(cde_model):
# closure to make things easier ...
# this assumes the section in form in registry selected ..
# ( we should enforce this as a validation rule )
# the data is passed in once to avoid reloading multiple
# times
raw_value = patient_model.get_form_value(self.review.registry.code,
self.form.name,
self.section.code,
cde_model.code, False,
context_model.pk, data)
if raw:
return raw_value
else:
return cde_model.get_display_value(raw_value)
if raw:
# return a dictionary
d = {}
for cde_model in get_normal_fields(self.section):
delimited_key = mongo_key_from_models(self.form, self.section,
cde_model)
try:
raw_value = get_field_value(cde_model)
d[delimited_key] = raw_value
except KeyError:
pass
return d
# if not raw return a list of pairs of display values
for cde_model in get_normal_fields(self.section):
if raw:
field = cde_model.code
else:
field = cde_model.name
try:
value = get_field_value(cde_model)
except KeyError:
if raw:
value = Missing.VALUE
else:
value = Missing.DISPLAY_VALUE
pairs.append((field, value))
return pairs
def _get_non_multiple_mongo_keys(registry_model):
# return a list of delimited mongo keys for the supplied registry
# skip the generated questionnaire ( the data from which is copied to the target clinical forms anyway)
# skip multisections as these are handled separately
delimited_keys = []
from rdrf.helpers.utils import mongo_key_from_models
for form_model in registry_model.forms:
if not form_model.is_questionnaire:
for section_model in form_model.section_models:
if not section_model.allow_multiple:
for cde_model in section_model.cde_models:
delimited_key = mongo_key_from_models(
form_model, section_model, cde_model)
delimited_keys.append(delimited_key)
return delimited_keys
def create_cde_field(self, spec):
if isinstance(spec, tuple):
form_model, section_model, cde_model = spec
field_label = cde_model.name
if section_model is None:
section_model = self._deduce_section(form_model, cde_model)
if section_model is None:
raise Exception("cannot deduce section for %s %s" %
(form_model.name, cde_model.code))
field_name = mongo_key_from_models(form_model, section_model,
cde_model)
elif isinstance(spec, dict):
field_dict = spec
field_name = field_dict["name"]
field_label = field_dict["label"]
target_dict = field_dict["target"]
form_name = target_dict["form"]
form_model = RegistryForm.objects.get(registry=self.registry_model,
name=form_name)
cde_code = target_dict["cde"]
cde_model = CommonDataElement.objects.get(code=cde_code)
section_code = target_dict["section"]
section_model = Section.objects.get(code=section_code)
else:
raise Exception("unknown spec: %s" % spec)
cde_model.is_required = False
field_factory = FieldFactory(self.registry_model, form_model,
section_model, cde_model)
field = field_factory.create_field()
field.rdrf_tag = FieldTags.DATA_ENTRY
field.label = field_label
return field_name, field
def delimited_key(self):
from rdrf.helpers.utils import mongo_key_from_models
return mongo_key_from_models(self.form_model, self.section_model,
self.cde_model)
def display_value2(self, form_model, section_model, cde_model,
mongo_value):
mongo_key = mongo_key_from_models(form_model, section_model, cde_model)
return self.display_value(mongo_key, mongo_value)
def _get_section_data(self,
patient_model,
context_model,
raw=False,
use_fields=False):
# we need raw values for initial data
# display values for the read only
if self.section:
assert not self.section.allow_multiple
pairs = []
data = patient_model.get_dynamic_data(self.review.registry,
collection="cdes",
context_id=context_model.pk,
flattened=True)
if raw:
if use_fields:
allowed_cde_codes = [
x.strip() for x in self.fields.strip().split(",")
]
def get_fields_iterator():
for cde_model in self.section.cde_models:
if cde_model.code in allowed_cde_codes:
yield cde_model
def get_fields_from_anywhere():
for section_model in self.form.section_models:
if not section_model.allow_multiple:
for cde_model in section_model.cde_models:
if cde_model.code in allowed_cde_codes:
yield self.form, section_model, cde_model
if self.section:
cde_iterator = get_fields_iterator
else:
cde_iterator = get_fields_from_anywhere
else:
def section_iterator():
for cde_model in get_normal_fields(self.section):
yield cde_model
cde_iterator = section_iterator
# return a dictionary
d = {}
for thing in cde_iterator():
if type(thing) is tuple:
form_model, section_model, cde_model = thing
else:
form_model = self.form
section_model = self.section
cde_model = thing
delimited_key = mongo_key_from_models(form_model,
section_model, cde_model)
try:
raw_value = get_field_value(patient_model,
self.review.registry,
context_model, form_model,
section_model, cde_model, data,
raw)
d[delimited_key] = raw_value
except KeyError:
pass
return d
# if not raw return a list of pairs of display values
for cde_model in get_normal_fields(self.section):
if raw:
field = cde_model.code
else:
field = cde_model.name
try:
value = get_field_value(patient_model, self.review.registry,
context_model, self.form, self.section,
cde_model, data, raw)
except KeyError:
if raw:
value = Missing.VALUE
else:
value = Missing.DISPLAY_VALUE
pairs.append((field, value))
return pairs