def directory_destroy(args):
"""Destroys the directory.
"""
target = Path(args.target[0])
metadata_read(target, 'directory')
logging.info("Removing directory %s...", target)
signals.pre_destroy(target=target)
rmtree_fixed(target)
signals.post_destroy(target=target)
def directory_destroy(args):
"""Destroys the directory.
"""
target = Path(args.target[0])
metadata_read(target, 'directory')
logger.info("Removing directory %s...", target)
signals.pre_destroy(target=target)
rmtree_fixed(target)
signals.post_destroy(target=target)
def directory_destroy(args):
"""Destroys the directory.
"""
target = Path(args.target[0])
read_dict(target / '.reprounzip', 'directory')
logging.info("Removing directory %s...", target)
signals.pre_destroy(target=target)
rmtree_fixed(target)
signals.post_destroy(target=target)
def directory_destroy(args):
"""Destroys the directory.
"""
target = Path(args.target[0])
read_dict(target / '.reprounzip', 'directory')
logging.info("Removing directory %s...", target)
signals.pre_destroy(target=target)
rmtree_fixed(target)
signals.post_destroy(target=target)
def chroot_destroy(args):
"""Destroys the directory, unmounting first if necessary.
"""
target = Path(args.target[0])
chroot_unmount(target)
logger.info("Removing directory %s...", target)
signals.pre_destroy(target=target)
rmtree_fixed(target)
signals.post_destroy(target=target)
def chroot_destroy(args):
"""Destroys the directory, unmounting first if necessary.
"""
target = Path(args.target[0])
chroot_unmount(target)
logging.info("Removing directory %s...", target)
signals.pre_destroy(target=target)
rmtree_fixed(target)
signals.post_destroy(target=target)
def chroot_destroy_dir(args):
"""Destroys the directory.
"""
target = Path(args.target[0])
mounted = metadata_read(target, 'chroot').get('mounted', False)
if mounted:
logger.critical("Magic directories might still be mounted")
sys.exit(1)
logger.info("Removing directory %s...", target)
signals.pre_destroy(target=target)
rmtree_fixed(target)
signals.post_destroy(target=target)
def chroot_destroy_dir(args):
"""Destroys the directory.
"""
target = Path(args.target[0])
mounted = metadata_read(target, 'chroot').get('mounted', False)
if mounted:
logging.critical("Magic directories might still be mounted")
sys.exit(1)
logging.info("Removing directory %s...", target)
signals.pre_destroy(target=target)
rmtree_fixed(target)
signals.post_destroy(target=target)
def chroot_destroy(args):
"""Destroys the directory, unmounting first if necessary.
"""
target = Path(args.target[0])
mounted = read_dict(target / '.reprounzip', 'chroot').get('mounted', False)
if mounted:
for m in ('/dev', '/proc'):
d = join_root(target / 'root', Path(m))
if d.exists():
logging.info("Unmounting %s...", d)
subprocess.check_call(['umount', str(d)])
logging.info("Removing directory %s...", target)
signals.pre_destroy(target=target)
rmtree_fixed(target)
signals.post_destroy(target=target)
def directory_create(args):
"""Unpacks the experiment in a folder.
Only the files that are not part of a package are copied (unless they are
missing from the system and were packed).
In addition, input files are put in a tar.gz (so they can be put back after
an upload) and the configuration file is extracted.
"""
if not args.pack:
logger.critical("setup needs the pack filename")
sys.exit(1)
pack = Path(args.pack[0])
target = Path(args.target[0])
if target.exists():
logger.critical("Target directory exists")
sys.exit(1)
if not issubclass(DefaultAbstractPath, PosixPath):
logger.critical("Not unpacking on POSIX system")
sys.exit(1)
signals.pre_setup(target=target, pack=pack)
# Unpacks configuration file
rpz_pack = RPZPack(pack)
rpz_pack.extract_config(target / 'config.yml')
# Loads config
config = load_config_file(target / 'config.yml', True)
packages = config.packages
target.mkdir()
root = (target / 'root').absolute()
# Checks packages
missing_files = False
for pkg in packages:
if pkg.packfiles:
continue
for f in pkg.files:
if not Path(f.path).exists():
logger.error(
"Missing file %s (from package %s that wasn't packed) "
"on host, experiment will probably miss it.",
f, pkg.name)
missing_files = True
if missing_files:
record_usage(directory_missing_pkgs=True)
logger.error("Some packages are missing, you should probably install "
"them.\nUse 'reprounzip installpkgs -h' for help")
root.mkdir()
try:
# Unpacks files
members = rpz_pack.list_data()
for m in members:
# Remove 'DATA/' prefix
m.name = str(rpz_pack.remove_data_prefix(m.name))
# Makes symlink targets relative
if m.issym():
linkname = PosixPath(m.linkname)
if linkname.is_absolute:
m.linkname = join_root(root, PosixPath(m.linkname)).path
logger.info("Extracting files...")
rpz_pack.extract_data(root, members)
rpz_pack.close()
# Original input files, so upload can restore them
input_files = [f.path for f in config.inputs_outputs.values()
if f.read_runs]
if input_files:
logger.info("Packing up original input files...")
inputtar = tarfile.open(str(target / 'inputs.tar.gz'), 'w:gz')
for ifile in input_files:
filename = join_root(root, ifile)
if filename.exists():
inputtar.add(str(filename), str(ifile))
inputtar.close()
# Meta-data for reprounzip
metadata_write(target, metadata_initial_iofiles(config), 'directory')
signals.post_setup(target=target, pack=pack)
except Exception:
rmtree_fixed(root)
raise
def chroot_create(args):
"""Unpacks the experiment in a folder so it can be run with chroot.
All the files in the pack are unpacked; system files are copied only if
they were not packed, and busybox is installed if /bin/sh wasn't packed.
In addition, input files are put in a tar.gz (so they can be put back after
an upload) and the configuration file is extracted.
"""
if not args.pack:
logger.critical("setup/create needs the pack filename")
sys.exit(1)
pack = Path(args.pack[0])
target = Path(args.target[0])
if target.exists():
logger.critical("Target directory exists")
sys.exit(1)
if not issubclass(DefaultAbstractPath, PosixPath):
logger.critical("Not unpacking on POSIX system")
sys.exit(1)
signals.pre_setup(target=target, pack=pack)
# We can only restore owner/group of files if running as root
restore_owner = should_restore_owner(args.restore_owner)
# Unpacks configuration file
rpz_pack = RPZPack(pack)
rpz_pack.extract_config(target / 'config.yml')
# Loads config
config = load_config_file(target / 'config.yml', True)
packages = config.packages
target.mkdir()
root = (target / 'root').absolute()
root.mkdir()
try:
# Checks that everything was packed
packages_not_packed = [pkg for pkg in packages if not pkg.packfiles]
if packages_not_packed:
record_usage(chroot_missing_pkgs=True)
logger.warning("According to configuration, some files were left "
"out because they belong to the following "
"packages:%s\nWill copy files from HOST SYSTEM",
''.join('\n %s' % pkg
for pkg in packages_not_packed))
missing_files = False
for pkg in packages_not_packed:
for f in pkg.files:
path = Path(f.path)
if not path.exists():
logger.error(
"Missing file %s (from package %s) on host, "
"experiment will probably miss it",
path, pkg.name)
missing_files = True
continue
dest = join_root(root, path)
dest.parent.mkdir(parents=True)
if path.is_link():
dest.symlink(path.read_link())
else:
path.copy(dest)
if restore_owner:
stat = path.stat()
dest.chown(stat.st_uid, stat.st_gid)
if missing_files:
record_usage(chroot_mising_files=True)
# Unpacks files
members = rpz_pack.list_data()
for m in members:
# Remove 'DATA/' prefix
m.name = str(rpz_pack.remove_data_prefix(m.name))
if not restore_owner:
uid = os.getuid()
gid = os.getgid()
for m in members:
m.uid = uid
m.gid = gid
logger.info("Extracting files...")
rpz_pack.extract_data(root, members)
rpz_pack.close()
resolvconf_src = Path('/etc/resolv.conf')
if resolvconf_src.exists():
try:
resolvconf_src.copy(root / 'etc/resolv.conf')
except IOError:
pass
# Sets up /bin/sh and /usr/bin/env, downloading busybox if necessary
sh_path = join_root(root, Path('/bin/sh'))
env_path = join_root(root, Path('/usr/bin/env'))
if not sh_path.lexists() or not env_path.lexists():
logger.info("Setting up busybox...")
busybox_path = join_root(root, Path('/bin/busybox'))
busybox_path.parent.mkdir(parents=True)
with make_dir_writable(join_root(root, Path('/bin'))):
download_file(busybox_url(config.runs[0]['architecture']),
busybox_path,
'busybox-%s' % config.runs[0]['architecture'])
busybox_path.chmod(0o755)
if not sh_path.lexists():
sh_path.parent.mkdir(parents=True)
sh_path.symlink('/bin/busybox')
if not env_path.lexists():
env_path.parent.mkdir(parents=True)
env_path.symlink('/bin/busybox')
# Original input files, so upload can restore them
input_files = [f.path for f in config.inputs_outputs.values()
if f.read_runs]
if input_files:
logger.info("Packing up original input files...")
inputtar = tarfile.open(str(target / 'inputs.tar.gz'), 'w:gz')
for ifile in input_files:
filename = join_root(root, ifile)
if filename.exists():
inputtar.add(str(filename), str(ifile))
inputtar.close()
# Meta-data for reprounzip
metadata_write(target, metadata_initial_iofiles(config), 'chroot')
signals.post_setup(target=target, pack=pack)
except Exception:
rmtree_fixed(root)
raise
def directory_create(args):
"""Unpacks the experiment in a folder.
Only the files that are not part of a package are copied (unless they are
missing from the system and were packed).
In addition, input files are put in a tar.gz (so they can be put back after
an upload) and the configuration file is extracted.
"""
if not args.pack:
logging.critical("setup needs the pack filename")
sys.exit(1)
pack = Path(args.pack[0])
target = Path(args.target[0])
if target.exists():
logging.critical("Target directory exists")
sys.exit(1)
if not issubclass(DefaultAbstractPath, PosixPath):
logging.critical("Not unpacking on POSIX system")
sys.exit(1)
signals.pre_setup(target=target, pack=pack)
# Unpacks configuration file
rpz_pack = RPZPack(pack)
rpz_pack.extract_config(target / 'config.yml')
# Loads config
config = load_config_file(target / 'config.yml', True)
packages = config.packages
target.mkdir()
root = (target / 'root').absolute()
# Checks packages
missing_files = False
for pkg in packages:
if pkg.packfiles:
continue
for f in pkg.files:
if not Path(f.path).exists():
logging.error(
"Missing file %s (from package %s that wasn't packed) "
"on host, experiment will probably miss it.",
f, pkg.name)
missing_files = True
if missing_files:
record_usage(directory_missing_pkgs=True)
logging.error("Some packages are missing, you should probably install "
"them.\nUse 'reprounzip installpkgs -h' for help")
root.mkdir()
try:
# Unpacks files
members = rpz_pack.list_data()
for m in members:
# Remove 'DATA/' prefix
m.name = str(rpz_pack.remove_data_prefix(m.name))
# Makes symlink targets relative
if m.issym():
linkname = PosixPath(m.linkname)
if linkname.is_absolute:
m.linkname = join_root(root, PosixPath(m.linkname)).path
logging.info("Extracting files...")
rpz_pack.extract_data(root, members)
rpz_pack.close()
# Original input files, so upload can restore them
input_files = [f.path for f in itervalues(config.inputs_outputs)
if f.read_runs]
if input_files:
logging.info("Packing up original input files...")
inputtar = tarfile.open(str(target / 'inputs.tar.gz'), 'w:gz')
for ifile in input_files:
filename = join_root(root, ifile)
if filename.exists():
inputtar.add(str(filename), str(ifile))
inputtar.close()
# Meta-data for reprounzip
metadata_write(target, metadata_initial_iofiles(config), 'directory')
signals.post_setup(target=target, pack=pack)
except Exception:
rmtree_fixed(root)
raise
def chroot_create(args):
"""Unpacks the experiment in a folder so it can be run with chroot.
All the files in the pack are unpacked; system files are copied only if
they were not packed, and busybox is installed if /bin/sh wasn't packed.
In addition, input files are put in a tar.gz (so they can be put back after
an upload) and the configuration file is extracted.
"""
if not args.pack:
logging.critical("setup/create needs the pack filename")
sys.exit(1)
pack = Path(args.pack[0])
target = Path(args.target[0])
if target.exists():
logging.critical("Target directory exists")
sys.exit(1)
if DefaultAbstractPath is not PosixPath:
logging.critical("Not unpacking on POSIX system")
sys.exit(1)
signals.pre_setup(target=target, pack=pack)
# We can only restore owner/group of files if running as root
restore_owner = should_restore_owner(args.restore_owner)
# Unpacks configuration file
rpz_pack = RPZPack(pack)
rpz_pack.extract_config(target / 'config.yml')
# Loads config
config = load_config_file(target / 'config.yml', True)
packages = config.packages
target.mkdir()
root = (target / 'root').absolute()
root.mkdir()
try:
# Checks that everything was packed
packages_not_packed = [pkg for pkg in packages if not pkg.packfiles]
if packages_not_packed:
record_usage(chroot_missing_pkgs=True)
logging.warning("According to configuration, some files were left "
"out because they belong to the following "
"packages:%s\nWill copy files from HOST SYSTEM",
''.join('\n %s' % pkg
for pkg in packages_not_packed))
missing_files = False
for pkg in packages_not_packed:
for f in pkg.files:
path = Path(f.path)
if not path.exists():
logging.error(
"Missing file %s (from package %s) on host, "
"experiment will probably miss it",
path, pkg.name)
missing_files = True
continue
dest = join_root(root, path)
dest.parent.mkdir(parents=True)
if path.is_link():
dest.symlink(path.read_link())
else:
path.copy(dest)
if restore_owner:
stat = path.stat()
dest.chown(stat.st_uid, stat.st_gid)
if missing_files:
record_usage(chroot_mising_files=True)
# Unpacks files
members = rpz_pack.list_data()
for m in members:
# Remove 'DATA/' prefix
m.name = str(rpz_pack.remove_data_prefix(m.name))
if not restore_owner:
uid = os.getuid()
gid = os.getgid()
for m in members:
m.uid = uid
m.gid = gid
logging.info("Extracting files...")
rpz_pack.extract_data(root, members)
rpz_pack.close()
# Sets up /bin/sh and /usr/bin/env, downloading busybox if necessary
sh_path = join_root(root, Path('/bin/sh'))
env_path = join_root(root, Path('/usr/bin/env'))
if not sh_path.lexists() or not env_path.lexists():
logging.info("Setting up busybox...")
busybox_path = join_root(root, Path('/bin/busybox'))
busybox_path.parent.mkdir(parents=True)
with make_dir_writable(join_root(root, Path('/bin'))):
download_file(busybox_url(config.runs[0]['architecture']),
busybox_path,
'busybox-%s' % config.runs[0]['architecture'])
busybox_path.chmod(0o755)
if not sh_path.lexists():
sh_path.parent.mkdir(parents=True)
sh_path.symlink('/bin/busybox')
if not env_path.lexists():
env_path.parent.mkdir(parents=True)
env_path.symlink('/bin/busybox')
# Original input files, so upload can restore them
input_files = [f.path for f in itervalues(config.inputs_outputs)
if f.read_runs]
if input_files:
logging.info("Packing up original input files...")
inputtar = tarfile.open(str(target / 'inputs.tar.gz'), 'w:gz')
for ifile in input_files:
filename = join_root(root, ifile)
if filename.exists():
inputtar.add(str(filename), str(ifile))
inputtar.close()
# Meta-data for reprounzip
metadata_write(target, metadata_initial_iofiles(config), 'chroot')
signals.post_setup(target=target, pack=pack)
except Exception:
rmtree_fixed(root)
raise
