def test_process_primers_only_fwd(self):
obs_primers = _process_primers(self.primers_dict["forward"], None)
obs_primers = {
seq.metadata['id']: str(seq)
for seq in obs_primers.view(DNAIterator)
}
exp_primers = {"forward": "GGGAATCTTCCACAATGG"}
self.assertDictEqual(obs_primers, exp_primers)
def test_process_primers_only_rev(self):
obs_primers = _process_primers(None, self.primers_dict["reverse"])
obs_primers = {
seq.metadata['id']: str(seq)
for seq in obs_primers.view(DNAIterator)
}
exp_primers = {"reverse": "CTGTTGTTAGAGAAGAACAC"}
self.assertDictEqual(obs_primers, exp_primers)
def test_process_primers(self):
obs_primers = _process_primers(self.primers_dict["forward"],
self.primers_dict["reverse"])
obs_primers = {
seq.metadata['id']: str(seq)
for seq in obs_primers.view(DNAIterator)
}
exp_primers = {
"forward": "GGGAATCTTCCACAATGG",
"reverse": "CTGTTGTTAGAGAAGAACAC"
}
self.assertDictEqual(obs_primers, exp_primers)