def test_collections(self):
data = Data(id=1, resolwe=MagicMock())
# test getting collections attribute
data.api(data.id).get = MagicMock(return_value={'collections': [5]})
data.resolwe.collection.filter = MagicMock(return_value=[
Collection(data.resolwe, **{'id': 5, 'name': 'XYZ'})
])
self.assertEqual(len(data.collections), 1)
self.assertEqual(data.collections[0].id, 5)
self.assertEqual(data.collections[0].name, 'XYZ')
# test caching collections attribute
self.assertEqual(len(data.collections), 1)
self.assertEqual(data.resolwe.collection.filter.call_count, 1)
# cache is cleared at update
data.update()
self.assertEqual(data._collections, None)
# raising error if data object is not saved
data.id = None
with self.assertRaises(ValueError):
_ = data.collections
def test_collections(self):
data = Data(id=1, resolwe=MagicMock())
# test getting collections attribute
data.api(data.id).get = MagicMock(return_value={'collections': [5]})
data.resolwe.collection.filter = MagicMock(return_value=[
Collection(data.resolwe, **{'id': 5, 'name': 'XYZ'})
])
self.assertEqual(len(data.collections), 1)
self.assertEqual(data.collections[0].id, 5)
self.assertEqual(data.collections[0].name, 'XYZ')
# test caching collections attribute
self.assertEqual(len(data.collections), 1)
self.assertEqual(data.resolwe.collection.filter.call_count, 1)
# cache is cleared at update
data.update()
self.assertEqual(data._collections, None)
# raising error if data object is not saved
data.id = None
with self.assertRaises(ValueError):
_ = data.collections
def test_descriptor_schema(self):
data = Data(id=1, resolwe=MagicMock())
data._descriptor_schema = 1
# test getting descriptor schema attribute
data.resolwe.descriptor_schema.get = MagicMock(
return_value='descriptor_schema')
self.assertEqual(data.descriptor_schema, 'descriptor_schema')
_, get_kwargs = data.resolwe.descriptor_schema.get.call_args
self.assertEqual(get_kwargs['id'], 1)
# descriptor schema is not set
data._descriptor_schema = None
self.assertEqual(data.descriptor_schema, None)
# cache is cleared at update
data._hydrated_descriptor_schema = 'descriptor_schema'
data.update()
self.assertEqual(data._hydrated_descriptor_schema, None)
# new data object
data = Data(resolwe=MagicMock())
data.descriptor_schema = 'my-schema'
self.assertEqual(data._descriptor_schema, 'my-schema')
data.resolwe.descriptor_schema.get = MagicMock(
return_value='descriptor_schema')
self.assertEqual(data.descriptor_schema, 'descriptor_schema')
_, get_kwargs = data.resolwe.descriptor_schema.get.call_args
self.assertEqual(get_kwargs['slug'], 'my-schema')
# hidrated descriptor schema
descriptor_schema = {
"slug":
"test-schema",
"name":
"Test schema",
"version":
"1.0.0",
"schema": [{
"default": "56G",
"type": "basic:string:",
"name": "description",
"label": "Object description"
}],
"id":
1,
}
data = Data(id=1,
descriptor_schema=descriptor_schema,
resolwe=MagicMock())
self.assertTrue(isinstance(data.descriptor_schema, DescriptorSchema))
# pylint: disable=no-member
self.assertEqual(data.descriptor_schema.slug, 'test-schema')
def test_collections(self):
resolwe_mock = MagicMock(**{
'collection.filter.return_value': ['collection_1', 'collection_2']
})
data = Data(id=1, resolwe=resolwe_mock)
self.assertEqual(data.collections, ['collection_1', 'collection_2'])
# cache is cleared at update
data.collections = MagicMock()
data.update()
self.assertEqual(data.collections.clear_cache.call_count, 1)
def test_children(self):
# Data with no id should fail.
data = Data(id=None, resolwe=MagicMock())
with self.assertRaisesRegex(ValueError, 'Instance must be saved *'):
data.children # pylint: disable=pointless-statement
# Core functionality should be checked with e2e tests.
# Check that cache is cleared at update.
data = Data(id=42, resolwe=MagicMock())
data._children = 'foo'
data.update()
self.assertEqual(data._children, None)
def test_children(self):
# Data with no id should fail.
data = Data(id=None, resolwe=MagicMock())
with self.assertRaisesRegex(ValueError, 'Instance must be saved *'):
data.children # pylint: disable=pointless-statement
# Core functionality should be checked with e2e tests.
# Check that cache is cleared at update.
data = Data(id=42, resolwe=MagicMock())
data._children = 'foo'
data.update()
self.assertEqual(data._children, None)
def test_children(self):
# Data with no id should fail.
data = Data(id=None, resolwe=MagicMock())
with self.assertRaisesRegex(ValueError, "Instance must be saved *"):
data.children
# Core functionality should be checked with e2e tests.
# Check that cache is cleared at update.
data = Data(id=42, resolwe=MagicMock())
data._children = "foo"
data.update()
self.assertEqual(data._children, None)
def test_descriptor_schema(self):
data = Data(id=1, resolwe=MagicMock())
data._descriptor_schema = 1
# test getting descriptor schema attribute
data.resolwe.descriptor_schema.get = MagicMock(return_value='descriptor_schema')
self.assertEqual(data.descriptor_schema, 'descriptor_schema')
_, get_kwargs = data.resolwe.descriptor_schema.get.call_args
self.assertEqual(get_kwargs['id'], 1)
# descriptor schema is not set
data._descriptor_schema = None
self.assertEqual(data.descriptor_schema, None)
# cache is cleared at update
data._hydrated_descriptor_schema = 'descriptor_schema'
data.update()
self.assertEqual(data._hydrated_descriptor_schema, None)
# new data object
data = Data(resolwe=MagicMock())
data.descriptor_schema = 'my-schema'
self.assertEqual(data._descriptor_schema, 'my-schema')
data.resolwe.descriptor_schema.get = MagicMock(return_value='descriptor_schema')
self.assertEqual(data.descriptor_schema, 'descriptor_schema')
_, get_kwargs = data.resolwe.descriptor_schema.get.call_args
self.assertEqual(get_kwargs['slug'], 'my-schema')
# hidrated descriptor schema
descriptor_schema = {
"slug": "test-schema",
"name": "Test schema",
"version": "1.0.0",
"schema": [
{
"default": "56G",
"type": "basic:string:",
"name": "description",
"label": "Object description"
}
],
"id": 1,
}
data = Data(id=1, descriptor_schema=descriptor_schema, resolwe=MagicMock())
self.assertTrue(isinstance(data.descriptor_schema, DescriptorSchema))
# pylint: disable=no-member
self.assertEqual(data.descriptor_schema.slug, 'test-schema')
def test_sample(self):
data = Data(id=1, resolwe=MagicMock())
data.resolwe.sample.filter = MagicMock(return_value=[])
self.assertEqual(data.sample, None)
data.resolwe.sample.filter = MagicMock(return_value=['sample'])
self.assertEqual(data.sample, 'sample')
# test caching
self.assertEqual(data.sample, 'sample')
self.assertEqual(data.resolwe.sample.filter.call_count, 1)
# cache is cleared at update
data._sample = 'sample'
data.update()
self.assertEqual(data._sample, None)
def test_collections(self):
data = Data(id=1, resolwe=MagicMock())
# test getting collections attribute
data.resolwe.collection.filter = MagicMock(return_value=['collection'])
self.assertEqual(data.collections, ['collection'])
# test caching collections attribute
self.assertEqual(data.collections, ['collection'])
self.assertEqual(data.resolwe.collection.filter.call_count, 1)
# cache is cleared at update
data._collections = ['collection']
data.update()
self.assertEqual(data._collections, None)
# raising error if data object is not saved
data.id = None
with self.assertRaises(ValueError):
_ = data.collections
def test_sample(self):
data = Data(id=1, resolwe=MagicMock())
data.api(data.id).get = MagicMock(return_value={'entities': [5]})
data.resolwe.sample.get = MagicMock(
return_value=Sample(data.resolwe, **{'id': 5, 'name': 'XYZ'}))
self.assertEqual(data.sample.id, 5)
self.assertEqual(data.sample.name, 'XYZ')
# test caching
self.assertEqual(data.sample.id, 5)
self.assertEqual(data.resolwe.sample.get.call_count, 1)
# cache is cleared at update
data.update()
self.assertEqual(data._sample, None)
# raising error if data object is not saved
data.id = None
with self.assertRaises(ValueError):
_ = data.sample
def test_sample(self):
data = Data(id=1, resolwe=MagicMock())
data.api(data.id).get = MagicMock(return_value={'entities': [5]})
data.resolwe.sample.get = MagicMock(
return_value=Sample(data.resolwe, **{'id': 5, 'name': 'XYZ'}))
self.assertEqual(data.sample.id, 5)
self.assertEqual(data.sample.name, 'XYZ')
# test caching
self.assertEqual(data.sample.id, 5)
self.assertEqual(data.resolwe.sample.get.call_count, 1)
# cache is cleared at update
data.update()
self.assertEqual(data._sample, None)
# raising error if data object is not saved
data.id = None
with self.assertRaises(ValueError):
_ = data.sample
def test_sample(self):
data = Data(id=1, resolwe=MagicMock())
data.resolwe.sample.filter = MagicMock(return_value=[])
self.assertEqual(data.sample, None)
data.resolwe.sample.filter = MagicMock(return_value=['sample'])
self.assertEqual(data.sample, 'sample')
# test caching
self.assertEqual(data.sample, 'sample')
self.assertEqual(data.resolwe.sample.filter.call_count, 1)
# cache is cleared at update
data._sample = 'sample'
data.update()
self.assertEqual(data._sample, None)
# raising error if data object is not saved
data.id = None
with self.assertRaises(ValueError):
_ = data.sample
def test_presample(self):
data = Data(id=1, resolwe=MagicMock())
data.resolwe.presample.filter = MagicMock(return_value=[])
self.assertEqual(data.presample, None)
data.resolwe.presample.filter = MagicMock(return_value=['presample'])
self.assertEqual(data.presample, 'presample')
# don't overwrite existing presample
data.resolwe.presample.filter = MagicMock(return_value=['presample 2'])
self.assertEqual(data.presample, 'presample')
# remove presample when gone
data.resolwe.presample.filter = MagicMock(return_value=[])
self.assertEqual(data.presample, None)
# cache is cleared at update
data._presample = 'presample'
data.update()
self.assertEqual(data._presample, None)