def _create_relation(self, relation_type, samples, positions=[], label=None): """Create group relation with the given samples and positions.""" if not isinstance(samples, list): raise ValueError("`samples` argument must be list.") if not isinstance(positions, list): raise ValueError("`positions` argument must be list.") if positions: if len(samples) != len(positions): raise ValueError( "`samples` and `positions` arguments must be of the same length." ) relation_data = { 'type': relation_type, 'collection': self.id, 'entities': [] } for sample, position in zip_longest(samples, positions): entity_dict = {'entity': get_sample_id(sample)} if position: entity_dict['position'] = position relation_data['entities'].append(entity_dict) if label: relation_data['label'] = label return self.resolwe.relation.create(**relation_data)
def _create_relation(self, relation_type, category, samples, positions=[], labels=[]): """Create relation.""" if not isinstance(samples, list): raise ValueError("`samples` argument must be list.") if not isinstance(positions, list): raise ValueError("`positions` argument must be list.") if not isinstance(labels, list): raise ValueError("`labels` argument must be list.") if positions and labels and not len(samples) == len(positions) == len( labels): raise ValueError( "`samples`, `positions` and `labels` arguments must be of the same length." ) elif labels and not len(samples) == len(labels): raise ValueError( "`samples` and `labels` arguments must be of the same length.") elif positions and not len(samples) == len(positions): raise ValueError( "`samples` and `positions` arguments must be of the same length." ) relation_data = { 'type': relation_type, 'collection': self.id, 'category': category, 'partitions': [] } for sample, position, label in zip_longest(samples, positions, labels): partition = {'entity': get_sample_id(sample)} if position: partition['position'] = position if label: partition['label'] = label relation_data['partitions'].append(partition) return self.resolwe.relation.create(**relation_data)
def _create_relation( self, relation_type, category, samples, positions=[], labels=[] ): """Create relation.""" if not isinstance(samples, list): raise ValueError("`samples` argument must be list.") if not isinstance(positions, list): raise ValueError("`positions` argument must be list.") if not isinstance(labels, list): raise ValueError("`labels` argument must be list.") if positions and labels and not len(samples) == len(positions) == len(labels): raise ValueError( "`samples`, `positions` and `labels` arguments must be of the same length." ) elif labels and not len(samples) == len(labels): raise ValueError( "`samples` and `labels` arguments must be of the same length." ) elif positions and not len(samples) == len(positions): raise ValueError( "`samples` and `positions` arguments must be of the same length." ) relation_data = { "type": relation_type, "collection": self.id, "category": category, "partitions": [], } for sample, position, label in zip_longest(samples, positions, labels): partition = {"entity": get_sample_id(sample)} if position: partition["position"] = position if label: partition["label"] = label relation_data["partitions"].append(partition) return self.resolwe.relation.create(**relation_data)
def _create_relation(self, relation_type, category, samples, positions=[], labels=[]): """Create relation.""" if not isinstance(samples, list): raise ValueError("`samples` argument must be list.") if not isinstance(positions, list): raise ValueError("`positions` argument must be list.") if not isinstance(labels, list): raise ValueError("`labels` argument must be list.") if positions and labels and not len(samples) == len(positions) == len(labels): raise ValueError( "`samples`, `positions` and `labels` arguments must be of the same length." ) elif labels and not len(samples) == len(labels): raise ValueError("`samples` and `labels` arguments must be of the same length.") elif positions and not len(samples) == len(positions): raise ValueError("`samples` and `positions` arguments must be of the same length.") relation_data = { 'type': relation_type, 'collection': self.id, 'category': category, 'partitions': [] } for sample, position, label in zip_longest(samples, positions, labels): partition = {'entity': get_sample_id(sample)} if position: partition['position'] = position if label: partition['label'] = label relation_data['partitions'].append(partition) return self.resolwe.relation.create(**relation_data)
def test_get_sample_id(self): sample = Sample(id=1, resolwe=MagicMock()) sample.id = 1 # this is overriden when initialized self.assertEqual(get_sample_id(sample), 1) self.assertEqual(get_sample_id(2), 2)
def test_get_sample_id(self): sample = Sample(id=1, resolwe=MagicMock()) sample.id = 1 # this is overriden when initialized self.assertEqual(get_sample_id(sample), 1) self.assertEqual(get_sample_id(2), 2)