def project_info():
return aggregate(
'projects',
queries.project_info,
app,
post_processing=[server_side.post_processing.date_to_string('_created')]
)
def sample():
return aggregate(
'samples',
queries.sample,
app,
post_processing=[server_side.post_processing.cast_to_sets('run_ids')]
)
def run_info():
return aggregate(
'runs',
queries.sequencing_run_information,
app,
post_processing=[server_side.post_processing.cast_to_sets('project_ids', 'review_statuses', 'useable_statuses')]
)
def test_aggregate():
patched_resolve_pipeline = patch("rest_api.aggregation.database_side.queries.resolve_pipeline")
patched_request = patch("rest_api.aggregation.database_side.request", new=FakeRequest({}))
patched_jsonify = patch("rest_api.aggregation.database_side.jsonify", new=dict)
with patched_resolve_pipeline, patched_request, patched_jsonify:
obs = database_side.aggregate(
"test_endpoint",
[{"a": "test", "aggregataion": "pipeline"}],
Mock(
logger=Mock(),
config={
"QUERY_PAGE": "page",
"QUERY_MAX_RESULTS": "max_results",
"META": "_meta",
"LINKS": "_links",
"ITEMS": "data",
},
),
)
exp = {"_meta": {"total": 2}, "data": fake_data}
assert obs == exp
def demultiplexing():
return aggregate(
'run_elements',
queries.demultiplexing,
app
)
def aggregate_by_lane():
return aggregate('run_elements', queries.run_elements_group_by_lane, app)