def generateProviderReport(results, providerId):
results = subsetResults(results=results, providerId=providerId)
fn = os.path.join(reportDir, "%s.html" % str(providerId))
with open(fn, 'w') as outF:
outF.write('<html>\n')
outF.write(' <head>\n')
outF.write(' <title>Report for %s</title>\n' % (PROVIDERS[providerId]))
outF.write(' </head>\n')
outF.write(' <body>\n')
outF.write(' <h1>Provider report for: %s</h1>\n' % (PROVIDERS[providerId]))
outF.write(' <br /><br />\n')
outF.write(' <table>\n')
# I have # unique species
outF.write(' <tr>\n')
outF.write(' <th>Number of unique species:</th>\n')
outF.write(' <td>%s</td>\n' % getNumberOfUniqueTaxa(results, providerId=providerId))
outF.write(' </tr>\n')
# I have # rare species ( <= 10 points)
outF.write(' <tr>\n')
outF.write(' <th>Number of rare species (<= 10 points)</th>\n')
outF.write(' <td>%s</td>\n' % getNumberOfRareTaxaByPoints(results, providerId=providerId))
outF.write(' </tr>\n')
# I have # rare species ( <= 5 providers)
outF.write(' <tr>\n')
outF.write(' <th>Number of rare species (<= 5 providers)</th>\n')
outF.write(' <td>%s</td>\n' % getNumberOfRareTaxaByProviders(results, providerId=providerId))
outF.write(' </tr>\n')
# I have # of taxa represented
outF.write(' <tr>\n')
outF.write(' <th>Number of taxa represented</th>\n')
outF.write(' <td>%s</td>\n' % getNumberOfTaxaRepresented(results, providerId=providerId))
outF.write(' </tr>\n')
outF.write(' </table>\n')
# I am ranked in the top 3 for data contributed for:
globalTopContrib = providerRankedInTopX(results, providerId)
outF.write(' <h2>I am ranked in the top 3 for data contributed to these species globally</h2>\n')
outF.write(' <ul>\n')
for r in globalTopContrib:
outF.write(' <li>%s - %s</li>\n' % (TAXA[r[2]]['name'], r[6]))
outF.write(' </ul>\n')
outF.write(' <br /><br />\n')
# I am one of x providers of species
globalProvRareSpecies = providerOfRareTaxa(results, providerId, maxPoints=10)
outF.write(' <h2>I am one of X providers of these species globally</h2>\n')
outF.write(' <ul>\n')
for r in globalProvRareSpecies:
outF.write(' <li>%s - %s</li>\n' % (TAXA[r[2]]['name'], r[7]))
outF.write(' </ul>\n')
outF.write(' <br /><br />\n')
# Regionally
# I am ranked in the top 3 for data contributed for:
# I am one of x providers of species
# For each continent
outF.write(' <h2>Continents</h2>\n')
for k in CONTINENTS_LOOKUP:
regionId = CONTINENTS_LOOKUP[k]
regionMostContrib = providerRankedInTopX(results, providerId, regionId=regionId)
regionRareProv = providerOfRareTaxa(results, providerId, regionId=regionId)
if len(regionMostContrib) > 0 or len(regionRareProv) > 0:
outF.write(' <h3>%s</h3>\n' % k)
outF.write(' <table>\n')
outF.write(' <tr>\n')
outF.write(' <td>\n')
# I am ranked in the top 3 for data contributed for:
if len(regionMostContrib) > 0:
outF.write(' <b>I am one of the top 3 contributers in the region for:</b>\n')
outF.write(' <ul>\n')
for r in regionMostContrib:
outF.write(' <li>%s - %s</li>\n' % (TAXA[r[2]]['name'], r[6]))
outF.write(' </ul>\n')
else:
outF.write(' \n')
outF.write(' </td>\n')
outF.write(' <td>\n')
# I am one of x providers of species
if len(regionRareProv) > 0:
outF.write(' <b>I am one of X providers of these species in this region:</b>\n')
outF.write(' <ul>\n')
for r in regionRareProv:
outF.write(' <li>%s - %s</li>\n' % (TAXA[r[2]]['name'], r[7]))
outF.write(' </ul>\n')
else:
outF.write(' \n')
outF.write(' </td>\n')
outF.write(' </tr>\n')
outF.write(' </table>\n')
outF.write(' <br /><br />\n')
# For each country
outF.write(' <h2>Countries Top 10</h2>\n')
for k in COUNTRIES_LOOKUP:
regionId = COUNTRIES_LOOKUP[k]
regionMostContrib = providerRankedInTopX(results, providerId, regionId=regionId)
regionRareProv = providerOfRareTaxa(results, providerId, regionId=regionId)
if len(regionMostContrib) > 0 or len(regionRareProv) > 0:
outF.write(' <h3>%s</h3>\n' % k)
outF.write(' <table>\n')
outF.write(' <tr>\n')
outF.write(' <td>\n')
# I am ranked in the top 3 for data contributed for:
if len(regionMostContrib) > 0:
outF.write(' <b>I am one of the top 3 contributers in the region for:</b>\n')
outF.write(' <ul>\n')
for r in regionMostContrib:
outF.write(' <li>%s - %s</li>\n' % (TAXA[r[2]]['name'], r[6]))
outF.write(' </ul>\n')
else:
outF.write(' \n')
outF.write(' </td>\n')
outF.write(' <td>\n')
# I am one of x providers of species
if len(regionRareProv) > 0:
outF.write(' <b>I am one of X providers of these species in this region:</b>\n')
outF.write(' <ul>\n')
for r in regionRareProv:
outF.write(' <li>%s - %s</li>\n' % (TAXA[r[2]]['name'], r[7]))
outF.write(' </ul>\n')
else:
outF.write(' \n')
outF.write(' </td>\n')
outF.write(' </tr>\n')
outF.write(' </table>\n')
outF.write(' <br /><br />\n')
# For each state
outF.write(' <h2>States Top 10</h2>\n')
for k in STATES_LOOKUP:
regionId = STATES_LOOKUP[k]
regionMostContrib = providerRankedInTopX(results, providerId, regionId=regionId)
regionRareProv = providerOfRareTaxa(results, providerId, regionId=regionId)
if len(regionMostContrib) > 0 or len(regionRareProv) > 0:
outF.write(' <h3>%s</h3>\n' % k)
outF.write(' <table>\n')
outF.write(' <tr>\n')
outF.write(' <td>\n')
# I am ranked in the top 3 for data contributed for:
if len(regionMostContrib) > 0:
outF.write(' <b>I am one of the top 3 contributers in the region for:</b>\n')
outF.write(' <ul>\n')
for r in regionMostContrib:
outF.write(' <li>%s - %s</li>\n' % (TAXA[r[2]]['name'], r[6]))
outF.write(' </ul>\n')
else:
outF.write(' \n')
outF.write(' </td>\n')
outF.write(' <td>\n')
# I am one of x providers of species
if len(regionRareProv) > 0:
outF.write(' <b>I am one of X providers of these species in this region:</b>\n')
outF.write(' <ul>\n')
for r in regionRareProv:
outF.write(' <li>%s - %s</li>\n' % (TAXA[r[2]]['name'], r[7]))
outF.write(' </ul>\n')
else:
outF.write(' \n')
outF.write(' </td>\n')
outF.write(' </tr>\n')
outF.write(' </table>\n')
outF.write(' <br /><br />\n')
# For each ocean
outF.write(' <h2>Oceans Top 10</h2>\n')
for k in OCEANS_LOOKUP:
regionId = OCEANS_LOOKUP[k]
regionMostContrib = providerRankedInTopX(results, providerId, regionId=regionId)
regionRareProv = providerOfRareTaxa(results, providerId, regionId=regionId)
if len(regionMostContrib) > 0 or len(regionRareProv) > 0:
outF.write(' <h3>%s</h3>\n' % k)
outF.write(' <table>\n')
outF.write(' <tr>\n')
outF.write(' <td>\n')
# I am ranked in the top 3 for data contributed for:
if len(regionMostContrib) > 0:
outF.write(' <b>I am one of the top 3 contributers in the region for:</b>\n')
outF.write(' <ul>\n')
for r in regionMostContrib:
outF.write(' <li>%s - %s</li>\n' % (TAXA[r[2]]['name'], r[6]))
outF.write(' </ul>\n')
else:
outF.write(' \n')
outF.write(' </td>\n')
outF.write(' <td>\n')
# I am one of x providers of species
if len(regionRareProv) > 0:
outF.write(' <b>I am one of X providers of these species in this region:</b>\n')
outF.write(' <ul>\n')
for r in regionRareProv:
outF.write(' <li>%s - %s</li>\n' % (TAXA[r[2]]['name'], r[7]))
outF.write(' </ul>\n')
else:
outF.write(' \n')
outF.write(' </td>\n')
outF.write(' </tr>\n')
outF.write(' </table>\n')
outF.write(' <br /><br />\n')
outF.write(' </body>\n')
outF.write('</html>')
getNumberOfRareTaxaByProviders, getNumberOfTaxaRepresented, \
getNumberOfUniqueTaxa, providerOfRareTaxa, providerRankedInTopX, \
subsetResults
outFn = "/home/cjgrady/workspace/occDataMiningPOC/data/reports/fish/providers.html"
if __name__ == "__main__":
numUnique = []
numRareSpecies = []
numRareProv = []
numTaxa = []
results = subsetResults()
for k in PROVIDERS:
print PROVIDERS[k]
nUnique = getNumberOfUniqueTaxa(results, providerId=k)
nRareSp = getNumberOfRareTaxaByPoints(results, providerId=k)
nRareP = getNumberOfRareTaxaByProviders(results, providerId=k)
numTax = getNumberOfTaxaRepresented(results, providerId=k)
numUnique.append((nUnique, k))
numRareSpecies.append((nRareSp, k))
numRareProv.append((nRareP, k))
numTaxa.append((numTax, k))
numUnique.sort(reverse=True)
numRareSpecies.sort(reverse=True)
numRareProv.sort(reverse=True)
numTaxa.sort(reverse=True)
