def verifyType3(ds: Dataset, module: str, element: str, verbose: bool,
log: list, fix_trivials: bool, multiplicityMin: uint32,
multiplicityMax: uint32) -> bool:
# Type 3 - Optional Data Element
not_exists = False
reason = ""
if element in ds:
elem = ds[element]
else:
not_exists = True
# this is optional
err_vr = False
err_vm = False
# do not check emptiness
if not not_exists:
if not verifyVR(elem, module, element, verbose, log):
reason = "Error - T<{}> {}"
reason = reason.format(ErrorType.Type3VR.value,
MMsgDC("BadValueRepresentation"))
err_vr = True
else:
if not verifyVM(elem, module, element, verbose, log,
multiplicityMin, multiplicityMax, "source"):
reason = "Error - T<{}> {}"
reason = reason.format(ErrorType.Type3VM.value,
MMsgDC("BadAttributeValueMultiplicity"))
err_vm = True
if len(reason) != 0:
ViolationMessage(reason, MMsgDC("Type3"), module, element, log,
verbose)
else:
ValidMessage(MMsgDC("Type3"), module, element, log, verbose)
return len(reason) == 0
def verifyNotZero(elem: DataElement, verbose: bool, log: list, which: int,
warningNotError: bool) -> bool:
success = True
if elem.is_empty:
return True
val = elem.value
vm = elem.VM
if type(val) == MultiValue:
if which == -1:
candidate = val
else:
if which >= vm:
return False
else:
candidate = [val[which]]
else:
if which >= 1:
return False
else:
candidate = [val]
for i, count in zip(candidate, range(0, len(candidate))):
if not isPydicomNumeric(i):
log.append("{} {} <{}>".format(
EMsgDC("TriedToVerifyNotZeroForNonNumericAttribute"),
MMsgDC("ForAttribute"), elem.description()))
return False
if i == 0:
log.append("{} {} {} {} <{}>".format(
(WMsgDC("ZeroValue")
if warningNotError else EMsgDC("ZeroValue")),
MMsgDC("ForValue"), (count + 1), MMsgDC("OfAttribute"),
elem.description()))
success = False
return success
def LogElementAndModule(module: str, element: str) -> str:
mesg = ""
if len(element) != 0:
mesg += MMsgDC("Element") + " = <{}> ".format(element)
if len(module) != 0:
mesg += MMsgDC("Module") + " = <{}> ".format(module)
return mesg
def verifyVM(elem: DataElement,
module: str,
element: str,
verbose: bool,
log: list,
multiplicityMin: uint32,
multiplicityMax: uint32,
specifiedSource=""):
ttag = elem.tag
current_vm = elem.VM
vm = dictionary_VM(ttag)
if multiplicityMax == 0 and multiplicityMin == 0:
[dictmin, has_min_factor, dictmax, has_max_factor] = getVM_min_max(vm)
source = MMsgDC("Dictionary")
else:
dictmin = multiplicityMin
dictmax = multiplicityMax
has_min_factor = False
has_max_factor = False
source = specifiedSource if len(specifiedSource) > 0 else MMsgDC(
"ModuleDefinition")
min_err = False
max_err = False
if has_min_factor:
min_err = (current_vm % dictmin == 0)
else:
min_err = current_vm < dictmin
if has_max_factor:
max_err = (current_vm % dictmax == 0)
else:
max_err = current_vm > dictmin
message = ""
err = min_err and max_err
if err:
mssg = "{} {} vm is {} ({}".format(
EMsgDC("BadAttributeValueMultiplicity"), vm, current_vm, dictmin)
if (dictmin != dictmax or not has_max_factor or not has_min_factor):
if not has_max_factor and dictmax == 0xFFFFFFFF:
mssg += "-n"
elif has_max_factor and dictmax > 1:
mssg += "-{}n".format(dictmax)
elif has_max_factor and dictmax == 1:
mssg += "-n".format(dictmax)
else:
mssg += "-{}".format(dictmax)
mssg += " {} {})".format(MMsgDC("RequiredBy"), source)
if len(element) != 0:
mssg += MMsgDC("Element") + "=<" + element + ">"
if len(module) != 0:
mssg += MMsgDC("Module") + "=<" + module + ">"
log.append(mssg)
return not err
def verifyVR(elem: DataElement,
module: str,
element: str,
verbose: bool,
log: list,
fix_trivial=False):
# tag = getTag();
# if (tag.isPrivateTag()) :
# return True
v = elem.value
try:
vrd = dictionary_VR(elem.tag)
except BaseException as err:
print(err)
mssg = EMsgDC("NoSuchElementInDictionary") + " "
if len(element) != 0:
mssg += MMsgDC("Element") + "=<" + element + ">"
if len(module) != 0:
mssg += MMsgDC("Module") + "=<" + module + ">"
log.append(mssg)
return False
vre = elem.VR
vrds = []
vre_equlas_vrd = False
if len(vrd) > 2 and len(vre) == 2:
vrds = vrd.split(' or ')
for dic_vr in vrds:
if dic_vr == vre:
vre_equlas_vrd = True
break
else:
vre_equlas_vrd = (vre == vrd)
if not vre_equlas_vrd and not(vrd == "OX" and vre == "OB" or vre == "OW") \
and not(vrd == "XS" and vre == "US" or vre == "SS") \
and not(vrd == "XO" and vre == "US" or vre == "SS" or vre == "OW") \
and not(vrd == "XL" and vre == "UL" or vre == "SL"):
mssg = EMsgDC("BadValueRepresentation") \
+ " " + vre + " (" + vrd + " " + MMsgDC("Required") + ")"
# print(vrds,'<-->' ,vrd,'<-->', vre, '<-->', elem)
if len(element) != 0:
mssg += MMsgDC("Element") + "=<" + element + ">"
if len(module) != 0:
mssg += MMsgDC("Module") + "=<" + module + ">"
log.append(mssg)
if fix_trivial:
elem.VR = vrd
mssg += " :fixed: by changing the vr"
return False
else:
return True
def verifyType2C(ds: Dataset, module: str, element: str, verbose: bool,
log: list, fix_trivials: bool, condition_function, mbpo: bool,
parent_ds: Dataset, root_ds: Dataset, multiplicityMin: uint32,
multiplicityMax: uint32) -> bool:
# Type 2C - Conditional Data Element (May be Empty)
err_not_exists = False
err_vr = False
err_vm = False
reason = ""
if condition_function == 0:
conditionNotSatisfied = True
else:
conditionNotSatisfied = not condition_function(ds, parent_ds, root_ds)
if element in ds:
elem = ds[element]
else:
if not conditionNotSatisfied:
reason = "Error - T<{}> {}"
reason = reason.format(ErrorType.Type2CAbsent.value,
MMsgDC("MissingAttribute"))
err_not_exists = True
if not err_not_exists:
if condition_function != 0 and conditionNotSatisfied and not mbpo:
reason = "Error - T<{}> {}"
reason = reason.format(
ErrorType.Type2CPresent.value,
MMsgDC(
"AttributePresentWhenConditionUnsatisfiedWithoutMayBePresentOtherwise"
))
if fix_trivials:
tmp = ErrorInfo(reason + "{} {}", fix_by_removing(ds, element))
reason = tmp.getWholeMessage()
if elem.is_empty:
if not verifyVR(elem, module, element, verbose, log):
reason = "Error - T<{}> {}"
reason = reason.format(ErrorType.Type2CVR.value,
MMsgDC("BadValueRepresentation"))
err_vr = True
else:
if not verifyVM(elem, module, element, verbose, log,
multiplicityMin, multiplicityMax, "source"):
reason = "Error - T<{}> {}"
reason = reason.format(
ErrorType.Type2CVM.value,
MMsgDC("BadAttributeValueMultiplicity"))
err_vm = True
if len(reason) != 0:
if fix_trivials:
ViolationMessage(reason, MMsgDC("Type2C"), module, element, log,
verbose, True)
else:
ViolationMessage(reason, MMsgDC("Type2C"), module, element, log,
verbose)
else:
ValidMessage(MMsgDC("Type2C"), module, element, log, verbose)
return len(reason) == 0
def verifyEnumValues(elem: DataElement, str_val: dict, verbose: bool,
log: list, which: int) -> bool:
success = True
val = elem.value
vm = elem.VM
if type(val) == MultiValue:
if which == -1:
candidate = val
else:
if which >= vm:
return False
else:
candidate = [val[which]]
else:
if which >= 1:
return False
else:
candidate = [val]
for i, count in zip(candidate, range(0, len(candidate))):
converted_i = i
if type(i) == DSfloat or \
type(i) == DSdecimal or type(i) == IS:
converted_i = str(i)
elif type(i) == str:
converted_i = i
else:
log.append(
EMsgDC("TriedToVerifyEnumeratedValueForNonStringAttribute") + \
MMsgDC("ForAttribute") + " <" + elem.description() + ">")
return False
if converted_i in str_val:
if verbose:
log.append(
MMsgDC("RecognizedEnumeratedValue") \
+ " <" + i + "> " + MMsgDC("Is") + " <" + str_val[i] \
+ "> " + MMsgDC("ForValue") + " {}".format(count + 1) \
+ " " + MMsgDC("OfAttribute") + " <" \
+ elem.description() + ">")
else:
msg = "{} <{}> {} {} {} {}".format(
EMsgDC("UnrecognizedEnumeratedValue"), i, MMsgDC("ForValue"),
count + 1, MMsgDC("OfAttribute"), elem.description())
log.append(msg)
success = False
return success
def verifyEnumValues_uint16(elem: DataElement, bin_method, verbose: bool,
log: list, which: int) -> bool:
success = True
val = elem.value
vm = elem.VM
if type(val) == MultiValue:
if which == -1:
candidate = val
else:
if which >= vm:
return False
else:
candidate = [val[which]]
else:
if which >= 1:
return False
else:
candidate = [val]
for i, count in zip(candidate, range(0, len(candidate))):
if not isPydicomNumeric(i):
log.append(
EMsgDC("TriedToVerifyEnumeratedValueForNonNumericAttribute") + \
MMsgDC("ForAttribute") + " <" + elem.description() + ">")
try:
int_input = uint16(i)
output = bin_method(int_input)
except:
output = []
if len(output) == 0:
msg = "{} <{}> {} {} {} {} {}".format(
EMsgDC("UnrecognizedEnumeratedValue"), i,
MMsgDC("ForValue"), count + 1, MMsgDC("OfAttribute"),
elem.description(), bin_method.__name__)
log.append(msg)
success = False
else:
if verbose:
log.append(
MMsgDC("RecognizedEnumeratedValue") \
+ " <{}> ".format(i) + MMsgDC("Is") + " <" + output \
+ "> " + MMsgDC("ForValue") + " {}".format(count + 1) \
+ " " + MMsgDC("OfAttribute") + " <" \
+ elem.description() + ">")
return success
def verifyType2(ds: Dataset, module: str, element: str, verbose: bool,
log: list, fix_trivials: bool, multiplicityMin: uint32,
multiplicityMax: uint32) -> bool:
# Type 2 - Required Data Element (May be Empty)
err_vr = False
err_vm = False
err_not_exists = False
reason = ""
if element in ds:
elem = ds[element]
else:
reason = "Error - T<{}> {}"
reason = reason.format(ErrorType.Type2.value,
MMsgDC("MissingAttribute"))
err_not_exists = True
if fix_trivials: # add an empty attrib
tmp = ErrorInfo(reason + "{} {}",
fix_ByAddingEmptyAttrib(ds, element))
reason = tmp.getWholeMessage()
if not err_not_exists:
# do not check emptiness
if not elem.is_empty:
if not verifyVR(elem, module, element, verbose, log):
reason = "Error - T<{}> {}"
reason = reason.format(ErrorType.Type2VR.value,
MMsgDC("BadValueRepresentation"))
err_vr = True
else:
if not verifyVM(elem, module, element, verbose, log,
multiplicityMin, multiplicityMax):
reason = "Error - T<{}> {}"
reason = reason.format(
ErrorType.Type2VM.value,
MMsgDC("BadAttributeValueMultiplicity"))
err_vm = True
if len(reason) != 0:
if fix_trivials:
ViolationMessage(reason, MMsgDC("Type2"), module, element, log,
verbose, True)
else:
ViolationMessage(reason, MMsgDC("Type2"), module, element, log,
verbose)
else:
ValidMessage(MMsgDC("Type2"), module, element, log, verbose)
return len(reason) == 0
def verifyDefinedTerms(elem: DataElement, str_val: dict, verbose: bool,
log: list, which: int) -> bool:
val = elem.value
vm = elem.VM
if type(val) == MultiValue:
if which == -1:
candidate = val
else:
if which >= vm:
return False
else:
candidate = [val[which]]
else:
if which >= 1:
return False
else:
candidate = [val]
for i, count in zip(candidate, range(0, len(candidate))):
if type(i) != str:
log.append(
EMsgDC("TriedToVerifyDefinedTermsForNonStringAttribute") + \
MMsgDC("ForAttribute") + " <" + elem.description() + ">")
return False
if i in str_val:
if verbose:
log.append(
MMsgDC("RecognizedDefinedTerms") \
+ " <" + i + "> " + MMsgDC("Is") + " <" + str_val[i] \
+ "> " + MMsgDC("ForValue") + " {}".format(count + 1) \
+ " " + MMsgDC("OfAttribute") + " <" \
+ elem.description() + ">")
else:
msg = "{} <{}> {} {} {} {}".format(
WMsgDC("UnrecognizedDefinedTerm"), i, MMsgDC("ForValue"),
count + 1, MMsgDC("OfAttribute"), elem.description())
log.append(msg)
return True
return False
def verifyRequired(ds: Dataset, module: str, element: str, verbose: bool,
log: list, fix_trivials: bool, multiplicityMin: uint32,
multiplicityMax: uint32) -> bool:
# Normalized Required Data Element
err_vr = False
err_vm = False
err_empty = False
err_not_exists = False
reason = ""
if element in ds:
elem = ds[element]
else:
reason = "Error - T<{}> {}"
reason = reason.format(ErrorType.Required.value,
MMsgDC("MissingAttribute"))
err_not_exists = True
if not err_not_exists:
if elem.is_empty():
reason = "Error - T<{}> {}"
reason = reason.format(ErrorType.RequiredEmpty.value,
MMsgDC("EmptyAttribute"))
err_empty = True
if not verifyVR(elem, module, element, verbose, log):
reason = "Error - T<{}> {}"
reason = reason.format(ErrorType.RequiredVR.value,
MMsgDC("BadValueRepresentation"))
err_vr = True
else:
if not verifyVM(elem, module, element, verbose, log,
multiplicityMin, multiplicityMax, "source"):
reason = "Error - T<{}> {}"
reason = reason.format(ErrorType.RequiredVM.value,
MMsgDC("BadAttributeValueMultiplicity"))
err_vm = True
if len(reason) != 0:
ViolationMessage(reason, MMsgDC("NormalizedRequired"), module, element,
log, verbose)
else:
ValidMessage(MMsgDC("NormalizedRequired"), module, element, log,
verbose)
return len(reason) == 0
def verifyEnumValues_tag(elem: DataElement, tag_method, verbose: bool,
log: list, which: int) -> bool:
# I think group and element for all values of multivalue attribs is the same. I should ask this?
success = True
val = elem.value
vm = elem.VM
g = uint16(elem.tag.group)
e = uint16(elem.tag.elemnt)
output = tag_method(g, e)
if len(output) == 0:
msg = "{} <({},{})> {} {} {}".format(
EMsgDC("UnrecognizedEnumeratedValue"), g, e, MMsgDC("ForValue"),
MMsgDC("OfAttribute"), elem.description())
log.append(msg)
success = False
else:
if verbose:
log.append(
MMsgDC("RecognizedEnumeratedValue") \
+ " <" + "({},{})".format(g, e) + "> " + MMsgDC(
"Is") + " <" + output \
+ "> " + MMsgDC("ForValue") + val \
+ " " + MMsgDC("OfAttribute") + " <" \
+ elem.description() + ">")
# if which == -1:
# candidate = val
# else:
# if which >= vm:
# return False
# else:
# candidate = val[which]
# for i in candidate:
# if type(i) != int:
# return False
# output = tag_method(uint16(elem.tag.group), uint16(elem.tag.elemnt))
# if len(output) == 0:
# print("Unrecognized defined term for {}".format(elem.keyword))
# success = False
# else:
# print("print sth if verbose")
return success
def verifyType3C(ds: Dataset, module: str, element: str, verbose: bool,
log: list, fix_trivials: bool, condition_function, mbpo: bool,
parent_ds: Dataset, root_ds: Dataset, multiplicityMin: uint32,
multiplicityMax: uint32) -> bool:
# Type 3C - Conditional and Optional Data Element (May be Empty or Absent)
reason = ""
not_exists = False
if condition_function == 0:
conditionNotSatisfied = True
else:
conditionNotSatisfied = not condition_function(ds, parent_ds, root_ds)
if element in ds:
elem = ds[element]
else:
not_exists = True
if not not_exists:
if not conditionNotSatisfied:
WarningMessage(MMsgDC("Unexpected"), MMsgDC("Type3C"), module,
element, log, verbose)
err_vr = False
err_vm = False
if not verifyVR(elem, module, element, verbose, log, fix_trivials):
reason = "Error - T<{}> {}".format(
ErrorType.Type3CVR.value, MMsgDC("BadValueRepresentation"))
err_vr = True
else:
if not verifyVM(elem, module, element, verbose, log,
multiplicityMin, multiplicityMax, "source"):
reason = "Error - T<{}> {}"
reason = reason.format(ErrorType.Type3CVM.value,
MMsgDC("BadAttributeValueMultiplicity"))
err_vm = True
if len(reason) != 0:
ViolationMessage(reason, MMsgDC("Type3C"), module, element, log,
verbose)
else:
ValidMessage(MMsgDC("Type3C"), module, element, log, verbose)
return len(reason) == 0
def ValidMessage(elementtype: str, module: str, element: str, log: list,
verbose: bool):
if verbose:
mesg = "{} - {} {}".format(MMsgDC("ValidElement"), elementtype,
LogElementAndModule(module, element))