def test_make_header_single_line(self):
ap = AnalysisReporter(output.SINGLE_LINE,
fields=('peak.chr',
'peak.start',
'peak.end',
'number_of_results',
'list(feature.id)'))
self.assertEqual(ap.make_header(),
"peak.chr\tpeak.start\tpeak.end\tnumber_of_results")
ap = AnalysisReporter(output.SINGLE_LINE,
fields=('peak.chr',
'peak.start',
'peak.end',
'number_of_results',
'list(feature.id)'),
max_hits=2)
self.assertEqual(ap.make_header(),
"peak.chr\tpeak.start\tpeak.end\tnumber_of_results\tfeature.id_1\tfeature.id_2")
def test_make_header_single_line(self):
ap = AnalysisReporter(output.SINGLE_LINE,
fields=('peak.chr',
'peak.start',
'peak.end',
'number_of_results',
'list(feature.id)'))
self.assertEqual(ap.make_header(),
"peak.chr\tpeak.start\tpeak.end\tnumber_of_results")
ap = AnalysisReporter(output.SINGLE_LINE,
fields=('peak.chr',
'peak.start',
'peak.end',
'number_of_results',
'list(feature.id)'),
max_hits=2)
self.assertEqual(ap.make_header(),
"peak.chr\tpeak.start\tpeak.end\tnumber_of_results\tfeature.id_1\tfeature.id_2")
def test_make_header_multi_line_custom_feature_type(self):
ap = AnalysisReporter(output.MULTI_LINE,
fields=('feature.id',
'feature.chr',
'feature.start',
'feature.end',
'peak.chr',
'peak.start',
'peak.end'),
feature_type='gene',
max_hits=2)
self.assertEqual(ap.make_header(),
"gene.id\tgene.chr\tgene.start\tgene.end\tpeak.chr\tpeak.start\tpeak.end")
def test_make_header_multi_line(self):
ap = AnalysisReporter(output.MULTI_LINE,
fields=('feature.id',
'feature.chr',
'feature.start',
'feature.end',
'peak.chr',
'peak.start',
'peak.end'))
self.assertEqual(ap.make_header(),
"feature.id\tfeature.chr\tfeature.start\tfeature.end\tpeak.chr\tpeak.start\tpeak.end")
ap = AnalysisReporter(output.MULTI_LINE,
fields=('feature.id',
'feature.chr',
'feature.start',
'feature.end',
'peak.chr',
'peak.start',
'peak.end'),
max_hits=2)
self.assertEqual(ap.make_header(),
"feature.id\tfeature.chr\tfeature.start\tfeature.end\tpeak.chr\tpeak.start\tpeak.end")
def test_make_header_multi_line_arbitrary_field(self):
ap = AnalysisReporter(output.MULTI_LINE,
fields=('feature.id',
'feature.chr',
'feature.start',
'feature.end',
'cutoff',
'peak.chr',
'peak.start',
'peak.end'),
max_hits=2)
self.assertEqual(ap.make_header(),
"feature.id\tfeature.chr\tfeature.start\tfeature.end\tcutoff\tpeak.chr\tpeak.start\tpeak.end")
def test_make_header_multi_line_custom_feature_type(self):
ap = AnalysisReporter(output.MULTI_LINE,
fields=('feature.id',
'feature.chr',
'feature.start',
'feature.end',
'peak.chr',
'peak.start',
'peak.end'),
feature_type='gene',
max_hits=2)
self.assertEqual(ap.make_header(),
"gene.id\tgene.chr\tgene.start\tgene.end\tpeak.chr\tpeak.start\tpeak.end")
