''' import os from genepy import util import sys import loaders.db as db import ropy.util import ropy.query from optparse import OptionParser from ropy.log import LogSetup ### --------------------------------------------------------------------------- ### Logging setup ### --------------------------------------------------------------------------- logsetup = LogSetup() logsetup.logname = "genepy-multiloader" logsetup.logpath = "%s/logs.txt" % os.path.realpath(os.path.dirname(__file__)) logsetup.setupLogging() logger = logsetup.logger ### --------------------------------------------------------------------------- ### main ### --------------------------------------------------------------------------- def main(): usage = "usage: %prog [Options]" parser = OptionParser(usage=usage) parser.add_option("-l", "--list", metavar="FILE", help="FILE containing the list of all organism common names and its associated file to load", action="store", type="string", dest="list") parser.add_option("-D", action="store", dest="dbhost") (options, args) = parser.parse_args()
### --------------------------------------------------------------------------- ### Database Setup ### --------------------------------------------------------------------------- host=config.get('Connection', 'host') database=config.get('Connection', 'database') user=config.get('Connection', 'user') password=config.get('Connection', 'password') connectionFactory = ConnectionFactory(host, database, user, password) ### --------------------------------------------------------------------------- ### Log Setup ### --------------------------------------------------------------------------- try: logsetup = LogSetup() logsetup.logname = "genepy" logsetup.logpath = config.get('Logging', 'path') logsetup.setupLogging() logger = logsetup.logger except Exception, e: print e print "Could not set up the logging, is the path set in the configuration file correct?" sys.exit(1) ### --------------------------------------------------------------------------- def main(): pass if __name__ == '__main__': main()