Python get_rosalind_data_path Examples

Example #1

File: fib_recurrence_rabbits.py Project: ackellyb/Bioinfo

def main():
    with open(get_rosalind_data_path('fib')) as file:
        integers = file.readline().split(' ')
        print(fibonacci_sequence(int(integers[0]), int(integers[1])))

Example #2

File: rna_dna_transcription.py Project: ackellyb/Bioinfo

def main():
    with open(get_rosalind_data_path('rna')) as file:
        dna = DNA(file.read())
        print(format_string(dna))

Example #3

def main():
    with open(get_rosalind_data_path('fib')) as file:
        integers = file.readline().split(' ')
        print(fibonacci_sequence(int(integers[0]), int(integers[1])))

Example #4

def main():
    with open(get_rosalind_data_path('iprb')) as file:
        kmn = list(map(lambda x: int(x), file.readline().split(" ")))
        print(compute(kmn[0], kmn[1], kmn[2]))

Example #5

File: gc_content_computation.py Project: ackellyb/Bioinfo

def main():
    dna_list = FASTADNA.read_list_from_file(get_rosalind_data_path('gc'))
    print(format_string(compute(dna_list)))

Example #6

File: iprb_mendels_first_law.py Project: ackellyb/Bioinfo

def main():
    with open(get_rosalind_data_path('iprb')) as file:
        kmn = list(map(lambda x: int(x), file.readline().split(" ")))
        print(compute(kmn[0], kmn[1], kmn[2]))

Example #7

File: recv_dna_strand_complement.py Project: ackellyb/Bioinfo

def main():
    with open(get_rosalind_data_path('recv')) as file:
        dna = DNA(file.read())
        print(format_string(dna))

Example #8

File: hamm_distance.py Project: ackellyb/Bioinfo

def main():
    with open(get_rosalind_data_path('hamm')) as file:
        dna = DNA(file.readline())
        dna2 = DNA(file.readline())
        print(dna.get_hamming_distance(dna2))

Example #9

File: hamm_distance.py Project: ackellyb/Bioinfo

def main():
    with open(get_rosalind_data_path('hamm')) as file:
        dna = DNA(file.readline())
        dna2 = DNA(file.readline())
        print(dna.get_hamming_distance(dna2))

Example #10

File: prot_transcription.py Project: ackellyb/Bioinfo

def main():
    with open(get_rosalind_data_path('prot')) as file:
        rna = RNA(file.readline())
        print(rna.transcribe_to_protein())

Example #11

File: gc_content_computation.py Project: ackellyb/Bioinfo

def main():
    dna_list = FASTADNA.read_list_from_file(get_rosalind_data_path('gc'))
    print(format_string(compute(dna_list)))

Example #12

def main():
    with open(get_rosalind_data_path('subs')) as file:
        DNAs = DNA(file.readline())
        DNAt = DNA(file.readline())
        index_list = map(lambda x: x, DNAs.find_substring_locations(DNAt))
        print(format_string(index_list))

Example #13

def main():
    with open(get_rosalind_data_path('prot')) as file:
        rna = RNA(file.readline())
        print(rna.transcribe_to_protein())