Python read_newick Examples

Example #1

File: rosalind_mend.py Project: orenlivne/euler

def mend(f):
    '''Main driver to solve this problem.'''
    return ro.join_list(geno_prob(rt.read_newick(f).root))

Example #2

File: rosalind_cntq.py Project: orenlivne/euler

def cntq(f):
    '''Main driver to solve this problem.'''
    return cntq_ncgll(int(ro.read_lines(f)[0])), num_quartets(rt.read_newick(StringIO.StringIO(ro.read_lines(f)[1])))

Example #3

File: rosalind_cbtl.py Project: orenlivne/euler

def cbtl(f):
    '''Main driver to solve this problem.'''
    for s in char_splits(aug_num_terminals(rt.read_newick(f))): print ro.join_list((int(x) for x in s), delimiter='')