Python getNumberOfReactions Examples

Example #1

File: rrTester.py Project: pablo-mayrgundter/roadrunner

def checkGetReactionRatesByIndex(testId):
    print string.ljust("Check " + testId, rpadding),
    errorFlag = False
    words = readLine().split()
    n = rrPython.getNumberOfReactions()
    for i in range(n):
        value = rrPython.getReactionRate(i)
        if expectApproximately(float(words[i]), value, 1E-6) == False:
            errorFlag = True
            break
    print passMsg(errorFlag)

Example #2

File: rrTester.py Project: TotteKarlsson/roadrunner

def checkGetReactionRatesByIndex(testId):
  print string.ljust ("Check " + testId, rpadding),
  errorFlag = False
  words = readLine().split()
  n = rrPython.getNumberOfReactions()
  for i in range (n):
      value = rrPython.getReactionRate (i)
      if expectApproximately(float (words[i]), value, 1E-6) == False:
          errorFlag = True
          break;
  print passMsg (errorFlag)

Example #3

File: rrTester.py Project: pablo-mayrgundter/roadrunner

def checkReactionIds(testId):
    print string.ljust("Check " + testId, rpadding),
    errorFlag = False
    line = readLine()
    words = line.split()
    expected = rrPython.getReactionIds()
    m = rrPython.getNumberOfReactions()
    for i in range(0, m):
        if words[i] != expected[i]:
            errorFlag = True
            break
    print passMsg(errorFlag)

Example #4

File: rrTester.py Project: TotteKarlsson/roadrunner

def checkReactionIds (testId):
  print string.ljust ("Check " + testId, rpadding),
  errorFlag = False
  line = readLine ()
  words = line.split()
  expected = rrPython.getReactionIds()
  m = rrPython.getNumberOfReactions();
  for i in range(0,m):
      if words[i] != expected[i]:
             errorFlag = True
             break
  print passMsg (errorFlag)

Example #5

File: rrTester.py Project: pablo-mayrgundter/roadrunner

def checkScaledFluxControlCoefficientMatrix(testId):
    # Unscaled Flux Control matrix
    print string.ljust("Check " + testId, rpadding),
    words = []
    errorFlag = False
    n = rrPython.getNumberOfReactions()
    st = rrPython.getScaledFluxControlCoefficientMatrix()
    for i in range(0, n):
        words = readLine().split()
        for j in range(0, n):
            if expectApproximately(float(words[j]), st[i, j], 1E-6) == False:
                errorFlag = True
                break
    print passMsg(errorFlag)

Example #6

File: rrTester.py Project: TotteKarlsson/roadrunner

def checkScaledFluxControlCoefficientMatrix(testId):
   # Unscaled Flux Control matrix
   print string.ljust ("Check " + testId, rpadding),
   words = []
   errorFlag = False
   n = rrPython.getNumberOfReactions();
   st = rrPython.getScaledFluxControlCoefficientMatrix()
   for i in range(0,n):
        words = readLine ().split()
        for j in range(0,n):
            if expectApproximately(float (words[j]), st[i,j], 1E-6) == False:
               errorFlag = True
               break
   print passMsg (errorFlag)

Example #7

File: rrTester.py Project: pablo-mayrgundter/roadrunner

def checkStoichiometryMatrix(testId):
    # Stoichiometry matrix
    print string.ljust("Check " + testId, rpadding),
    errorFlag = False
    m = rrPython.getNumberOfFloatingSpecies()
    n = rrPython.getNumberOfReactions()
    st = rrPython.getStoichiometryMatrix()
    for i in range(0, m):
        line = readLine()
        words = line.split()
        for j in range(0, n):
            if expectApproximately(float(words[j]), st[i, j], 1E-6) == False:
                errorFlag = True
                break
    print passMsg(errorFlag)

Example #8

File: rrTester.py Project: TotteKarlsson/roadrunner

def checkStoichiometryMatrix(testId):
   # Stoichiometry matrix
   print string.ljust ("Check " + testId, rpadding),
   errorFlag = False
   m = rrPython.getNumberOfFloatingSpecies()
   n = rrPython.getNumberOfReactions();
   st = rrPython.getStoichiometryMatrix()
   for i in range(0,m):
       line = readLine ()
       words = line.split()
       for j in range(0,n):
           if expectApproximately(float (words[j]), st[i,j], 1E-6) == False:
              errorFlag = True
              break
   print passMsg (errorFlag)

Example #9

File: rrTester.py Project: pablo-mayrgundter/roadrunner

def checkFluxes(testId):
    words = []
    fluxes = []
    # Steady State Fluxes
    print string.ljust("Check " + testId, rpadding),
    errorFlag = False
    m = rrPython.getNumberOfFloatingSpecies()
    n = rrPython.getNumberOfReactions()
    for i in range(0, n):
        line = readLine()
        words = line.split()
        words.append(rrPython.getValue(words[0]))
        fluxes.append(words)

    for i in range(0, n):
        expectedValue = float(fluxes[i][1])
        if expectApproximately(expectedValue, fluxes[i][2], 1E-6) == False:
            errorFlag = True
            break
    print passMsg(errorFlag)

Example #10

File: rrTester.py Project: TotteKarlsson/roadrunner

def checkFluxes(testId):
   words = []
   fluxes = []
   # Steady State Fluxes
   print string.ljust ("Check " + testId, rpadding),
   errorFlag = False
   m = rrPython.getNumberOfFloatingSpecies()
   n = rrPython.getNumberOfReactions();
   for i in range (0,n):
       line = readLine ()
       words = line.split()
       words.append (rrPython.getValue(words[0]))
       fluxes.append (words)

   for i in range (0,n):
       expectedValue = float (fluxes[i][1])
       if expectApproximately (expectedValue, fluxes[i][2], 1E-6) == False:
          errorFlag = True
          break
   print passMsg (errorFlag)

Example #11

File: getNumberOfReactions.py Project: Alcibiades586/roadrunner

import rrPython
import os
import csv
os.chdir('C:\\RoadRunner\\bin')

function = 'getNumberOfReactions'
try:
    num = rrPython.getNumberOfReactions()
    if str(num) is not False:
        result = 'True'
    else:
        result = 'False'
except:
    result = 'False'


PythonTestResults = open('C:\\RoadRunner\\PythonTestResults.csv','a')
writer = csv.writer(PythonTestResults)
writevar = function + '=' + result
writer.writerow([writevar])
PythonTestResults.close()

Example #12

File: getNumberOfReactions.py Project: JulianoGianlupi/CompuCell3D-NanoHub

import rrPython
import os
import csv
os.chdir('C:\\RoadRunner\\bin')

function = 'getNumberOfReactions'
try:
    num = rrPython.getNumberOfReactions()
    if str(num) is not False:
        result = 'True'
    else:
        result = 'False'
except:
    result = 'False'

PythonTestResults = open('C:\\RoadRunner\\PythonTestResults.csv', 'a')
writer = csv.writer(PythonTestResults)
writevar = function + '=' + result
writer.writerow([writevar])
PythonTestResults.close()