Python RunObject.to_db Examples

Example #1

def create_run_task(run_id, inputs, output_directory=None):
    logger.info("Creating and validating Run for %s" % run_id)
    run = RunObject.from_cwl_definition(run_id, inputs)
    run.ready()
    RunObject.to_db(run)
    submit_job.delay(run_id, output_directory)
    logger.info("Run %s Ready" % run_id)

Example #2

def create_run_task(run_id, inputs, output_directory=None):
    logger.info("Creating and validating Run")
    try:
        run = RunObject.from_cwl_definition(run_id, inputs)
        run.ready()
    except RunCreateException as e:
        run = RunObject.from_db(run_id)
        run.fail({'details': str(e)})
        RunObject.to_db(run)
        logger.info("Run %s Failed" % run_id)
    else:
        RunObject.to_db(run)
        submit_job.delay(run_id, output_directory)
        logger.info("Run %s Ready" % run_id)