def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("First-order optimisation algorithm for linear inverse problems.")
cite_info1.bibtex = \
("@article{beck2009,\n" +
"title={A fast iterative shrinkage-thresholding algorithm for linear inverse problems},\n" +
"author={Amir and Beck, Mark and Teboulle},\n" +
"journal={SIAM Journal on Imaging Sciences},\n" +
"volume={2},\n" +
"number={1},\n" +
"pages={183--202},\n" +
"year={2009},\n" +
"publisher={SIAM}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T A fast iterative shrinkage-thresholding algorithm for linear inverse problems\n" +
"%A Beck, Amir\n" +
"%A Teboulle, Mark\n" +
"%J SIAM Journal on Imaging Sciences\n" +
"%V 2\n" +
"%N 1\n" +
"%P 183--202\n" +
"%@ --\n" +
"%D 2009\n" +
"%I SIAM\n")
cite_info1.doi = "doi: "
return cite_info1
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("First-order optimisation algorithm for linear inverse problems.")
cite_info1.bibtex = \
("@article{beck2009,\n" +
"title={A fast iterative shrinkage-thresholding algorithm for linear inverse problems},\n" +
"author={Amir and Beck, Mark and Teboulle},\n" +
"journal={SIAM Journal on Imaging Sciences},\n" +
"volume={2},\n" +
"number={1},\n" +
"pages={183--202},\n" +
"year={2009},\n" +
"publisher={SIAM}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T A fast iterative shrinkage-thresholding algorithm for linear inverse problems\n" +
"%A Beck, Amir\n" +
"%A Teboulle, Mark\n" +
"%J SIAM Journal on Imaging Sciences\n" +
"%V 2\n" +
"%N 1\n" +
"%P 183--202\n" +
"%@ --\n" +
"%D 2009\n" +
"%I SIAM\n")
cite_info1.doi = "doi: "
return cite_info1
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("TomoPhantom is a software package to generate 2D-4D analytical phantoms and their Radon transforms for various testing purposes.")
cite_info1.bibtex = \
("@article{kazantsevTP2018,\n" +
"title={TomoPhantom, a software package to generate 2D-4D analytical phantoms for CT image reconstruction algorithm benchmarks},\n" +
"author={Daniil and Kazantsev, Valery and Pickalov, Srikanth and Nagella, Edoardo and Pasca, Philip and Withers},\n" +
"journal={Software X},\n" +
"volume={7},\n" +
"number={--},\n" +
"pages={150--155},\n" +
"year={2018},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T TomoPhantom, a software package to generate 2D-4D analytical phantoms for CT image reconstruction algorithm benchmarks\n" +
"%A Kazantsev, Daniil\n" +
"%A Pickalov, Valery\n" +
"%A Nagella, Srikanth\n" +
"%A Pasca, Edoardo\n" +
"%A Withers, Philip\n" +
"%J Software X\n" +
"%V 7\n" +
"%N --\n" +
"%P 150--155\n" +
"%@ --\n" +
"%D 2018\n" +
"%I Elsevier\n")
cite_info1.doi = "doi:10.1016/j.softx.2018.05.003"
return [cite_info1]
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.name = 'citation3'
cite_info.description = \
("The tomography reconstruction algorithm used in this processing \
pipeline is part of the ASTRA Toolbox" )
cite_info.bibtex = \
("@article{palenstijn2011performance,\n" +
"title={Performance improvements for iterative electron \
tomography reconstruction using graphics processing units \
(GPUs)},\n" +
"author={Palenstijn, WJ and Batenburg, KJ and Sijbers, J},\n" +
"journal={Journal of structural biology},\n" +
"volume={176},\n" +
"number={2},\n" +
"pages={250--253},\n" +
"year={2011},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Performance improvements for iterative electron tomography \
reconstruction using graphics processing units (GPUs)\n" +
"%A Palenstijn, WJ\n" +
"%A Batenburg, KJ\n" +
"%A Sijbers, J\n" +
"%J Journal of structural biology\n" +
"%V 176\n" +
"%N 2\n" +
"%P 250-253\n" +
"%@ 1047-8477\n" +
"%D 2011\n" +
"%I Elsevier\n")
cite_info.doi = "doi: 10.1016/j.jsb.2011.07.017"
return super(AstraReconGpu, self).get_citation_information() + \
[cite_info]
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("The CCPi-Regularisation toolkit provides a set of variational regularisers (denoisers)\
which can be embedded in a plug-and-play fashion into proximal splitting methods \
for image reconstruction. CCPi-RGL comes with algorithms that can satisfy various \
prior expectations of the reconstructed object, for example being piecewise-constant \
or piecewise-smooth nature." )
cite_info1.bibtex = \
("@article{kazantsev2019,\n" +
"title={CCPi-Regularisation Toolkit for computed tomographic image reconstruction with proximal splitting algorithms \},\n" +
"author={Daniil and Kazantsev, Edoardo and Pasca, \
Martin and Turner, Philip and Withers},\n" +
"journal={Software X},\n" +
"volume={Under revision},\n" +
"number={--},\n" +
"pages={--},\n" +
"year={2019},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T CCPi-Regularisation Toolkit for computed tomographic image reconstruction with proximal splitting algorithms\n" +
"%A Kazantsev, Daniil\n" +
"%A Pasca, Edoardo\n" +
"%A Turner, Martin\n" +
"%A Withers, Philip\n" +
"%J Software X\n" +
"%V --\n" +
"%N --\n" +
"%P --\n" +
"%@ --\n" +
"%D 2019\n" +
"%I Elsevier\n")
cite_info1.doi = "doi: "
return [cite_info1]
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.name = 'citation3'
cite_info.description = \
("The tomography reconstruction algorithm used in this processing \
pipeline is part of the ASTRA Toolbox")
cite_info.bibtex = \
("@article{palenstijn2011performance,\n" +
"title={Performance improvements for iterative electron \
tomography reconstruction using graphics processing units \
(GPUs)},\n" +
"author={Palenstijn, WJ and Batenburg, KJ and Sijbers, J},\n" +
"journal={Journal of structural biology},\n" +
"volume={176},\n" +
"number={2},\n" +
"pages={250--253},\n" +
"year={2011},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Performance improvements for iterative electron tomography \
reconstruction using graphics processing units (GPUs)\n" +
"%A Palenstijn, WJ\n" +
"%A Batenburg, KJ\n" +
"%A Sijbers, J\n" +
"%J Journal of structural biology\n" +
"%V 176\n" +
"%N 2\n" +
"%P 250-253\n" +
"%@ 1047-8477\n" +
"%D 2011\n" +
"%I Elsevier\n")
cite_info.doi = "doi: 10.1016/j.jsb.2011.07.017"
return super(AstraReconGpu, self).get_citation_information() + \
[cite_info]
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("The tomography reconstruction algorithm used in this processing \
pipeline is part of the ASTRA Toolbox" )
cite_info1.bibtex = \
("@article{van2016fast,\n" +
"title={Fast and flexible X-ray tomography using the ASTRA \
toolbox},\n" +
"author={van Aarle, Wim and Palenstijn, Willem Jan and Cant, \
Jeroen and Janssens, Eline and Bleichrodt, Folkert and \
Dabravolski, Andrei and De Beenhouwer, Jan and Batenburg, K Joost\
and Sijbers, Jan},\n" +
"journal={Optics Express},\n" +
"volume={24},\n" +
"number={22},\n" +
"pages={25129--25147},\n" +
"year={2016},\n" +
"publisher={Optical Society of America}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T Fast and flexible X-ray tomography using the ASTRA \
toolbox\n" +
"%A van Aarle, Wim\n" +
"%A Palenstijn, Willem Jan\n" +
"%A Cant, Jeroen\n" +
"%A Janssens, Eline\n" +
"%A Bleichrodt, Folkert\n" +
"%A Dabravolski, Andrei\n" +
"%A De Beenhouwer, Jan\n" +
"%A Batenburg, K Joost\n" +
"%A Sijbers, Jan\n" +
"%J Optics Express\n" +
"%V 24\n" +
"%N 22\n" +
"%P 25129-25147\n" +
"%@ 1094-4087\n" +
"%D 2016\n" +
"%I Optical Society of America\n")
cite_info1.doi = "doi: 10.1364/OE.24.025129"
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = \
("The tomography reconstruction algorithm used in this processing \
pipeline is part of the ASTRA Toolbox" )
cite_info2.bibtex = \
("@article{van2015astra,\n" +
"title={The ASTRA Toolbox: A platform for advanced algorithm \
development in electron tomography},\n" +
"author={van Aarle, Wim and Palenstijn, Willem Jan and \
De Beenhouwer, Jan and Altantzis, Thomas and Bals, Sara and \
Batenburg, K Joost and Sijbers, Jan},\n" +
"journal={Ultramicroscopy},\n" +
"volume={157},\n" +
"pages={35--47},\n" +
"year={2015},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Numerical removal of ring artifacts in microtomography\n" +
"%A Raven, Carsten\n" +
"%J Review of scientific instruments\n" +
"%V 69\n" +
"%N 8\n" +
"%P 2978-2980\n" +
"%@ 0034-6748\n" +
"%D 1998\n" +
"%I AIP Publishing")
cite_info2.doi = "doi: 10.1364/OE.24.025129"
return [cite_info1, cite_info2]
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("The CCPi-Regularisation toolkit provides a set of variational regularisers (denoisers) which can be embedded in a plug-and-play fashion into proximal splitting methods for image reconstruction. CCPi-RGL comes with algorithms that can satisfy various prior expectations of the reconstructed object, for example being piecewise-constant or piecewise-smooth nature.")
cite_info1.bibtex = \
("@article{kazantsev2019,\n" +
"title={CCPi-Regularisation Toolkit for computed tomographic image reconstruction with proximal splitting algorithms},\n" +
"author={Daniil and Kazantsev, Edoardo and Pasca, Martin and Turner, Philip and Withers},\n" +
"journal={Software X},\n" +
"volume={9},\n" +
"number={},\n" +
"pages={317-323},\n" +
"year={2019},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T CCPi-Regularisation Toolkit for computed tomographic image reconstruction with proximal splitting algorithms\n" +
"%A Kazantsev, Daniil\n" +
"%A Pasca, Edoardo\n" +
"%A Turner, Martin\n" +
"%A Withers, Philip\n" +
"%J Software X\n" +
"%V 9\n" +
"%N \n" +
"%P 317--323\n" +
"%@ --\n" +
"%D 2019\n" +
"%I Elsevier\n")
cite_info1.doi = "doi: 10.1016/j.softx.2019.04.003"
if (self.parameters['method'] == 'ROF_TV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Rudin-Osher-Fatemi explicit PDE minimisation method for smoothed Total Variation regulariser"
)
cite_info2.bibtex = \
("@article{ROF1992,\n" +
"title={Nonlinear total variation based noise removal algorithms},\n" +
"author={L. Rudin, S. Osher, E. Fatemi},\n" +
"journal={Physica D.},\n" +
"volume={60},\n" +
"number={},\n" +
"pages={259--268},\n" +
"year={1992},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Nonlinear total variation based noise removal algorithms\n" +
"%A Rudin, L.\n" +
"%A Osher, S.\n" +
"%A Fatemi, Fatemi\n" +
"%J Physica D.\n" +
"%V 60\n" +
"%N \n" +
"%P 259--268\n" +
"%@ \n" +
"%D 1992\n" +
"%I Elsevier\n")
cite_info2.doi = "doi: 10.1016/0167-2789(92)90242-F"
if (self.parameters['method'] == 'FGP_TV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Fast-Gradient-Projection algorithm for Total Variation regulariser"
)
cite_info2.bibtex = \
("@article{FGP2009,\n" +
"title={Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems},\n" +
"author={Amir and Beck, Mark and Teboulle},\n" +
"journal={IEEE Transactions on Image Processing},\n" +
"volume={18},\n" +
"number={11},\n" +
"pages={2419--2434},\n" +
"year={2009},\n" +
"publisher={IEEE}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems\n" +
"%A Beck, Amir\n" +
"%A Teboulle, Mark.\n" +
"%J IEEE Transactions on Image Processing\n" +
"%V 18\n" +
"%N 11\n" +
"%P 2419--2434\n" +
"%@ \n" +
"%D 2009\n" +
"%I IEEE\n")
cite_info2.doi = "doi: 10.1109/TIP.2009.2028250"
if (self.parameters['method'] == 'SB_TV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"The Split Bregman approach for Total Variation regulariser")
cite_info2.bibtex = \
("@article{SBTV2009,\n" +
"title={The split Bregman method for L1-regularized problems},\n" +
"author={Tom and Goldstein, Stanley and Osher},\n" +
"journal={SIAM journal on imaging sciences},\n" +
"volume={2},\n" +
"number={2},\n" +
"pages={323--343},\n" +
"year={2009},\n" +
"publisher={SIAM}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T The split Bregman method for L1-regularized problems\n" +
"%A Goldstein, Tom\n" +
"%A Osher, Stanley.\n" +
"%J SIAM journal on imaging sciences\n" +
"%V 2\n" +
"%N 2\n" +
"%P 323--343\n" +
"%@ \n" +
"%D 2009\n" +
"%I SIAM\n")
cite_info2.doi = "doi: 10.1137/080725891"
if (self.parameters['method'] == 'TGV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Total generalized variation regulariser for piecewise-smooth recovery"
)
cite_info2.bibtex = \
("@article{TGV2010,\n" +
"title={Total generalized variation},\n" +
"author={Kristian and Bredies, Karl and Kunisch, Thomas and Pock},\n" +
"journal={SIAM journal on imaging sciences},\n" +
"volume={3},\n" +
"number={3},\n" +
"pages={492--526},\n" +
"year={2010},\n" +
"publisher={SIAM}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Total generalized variation\n" +
"%A Bredies, Kristian\n" +
"%A Kunisch, Kurl.\n" +
"%A Pock, Thomas.\n" +
"%J SIAM journal on imaging sciences\n" +
"%V 3\n" +
"%N 3\n" +
"%P 492--526\n" +
"%@ \n" +
"%D 2010\n" +
"%I SIAM\n")
cite_info2.doi = "doi: 10.1137/080725891"
if (self.parameters['method'] == 'LLT_ROF'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Combination for ROF model and LLT for piecewise-smooth recovery"
)
cite_info2.bibtex = \
("@article{ROFLLT2017,\n" +
"title={Model-based iterative reconstruction using higher-order regularization of dynamic synchrotron data},\n" +
"author={Daniil and Kazantsev, Enyu and Guo, Andre and Phillion, Philip and Withers, Peter and Lee},\n" +
"journal={Measurement Science and Technology},\n" +
"volume={28},\n" +
"number={9},\n" +
"pages={094004},\n" +
"year={2017},\n" +
"publisher={IoP}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Model-based iterative reconstruction using higher-order regularization of dynamic synchrotron data\n" +
"%A Kazantsev, Daniil\n" +
"%A Enyu, Guo.\n" +
"%A Phillion, Andre.\n" +
"%A Withers, Philip.\n" +
"%A Lee, Peter.\n" +
"%J Measurement Science and Technology\n" +
"%V 28\n" +
"%N 9\n" +
"%P 094004\n" +
"%@ \n" +
"%D 2017\n" +
"%I IoP\n")
cite_info2.doi = "doi: 10.1088/1361-6501"
if (self.parameters['method'] == 'NDF'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Nonlinear or linear duffison as a regulariser ")
cite_info2.bibtex = \
("@article{NDF1990,\n" +
"title={Scale-space and edge detection using anisotropic diffusion},\n" +
"author={Pietro and Perona, Jitendra and Malik},\n" +
"journal={IEEE Transactions on pattern analysis and machine intelligence},\n" +
"volume={12},\n" +
"number={7},\n" +
"pages={629--639},\n" +
"year={1990},\n" +
"publisher={IEEE}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Scale-space and edge detection using anisotropic diffusion\n" +
"%A Pietro, Perona\n" +
"%A Jitendra, Malik.\n" +
"%J IEEE Transactions on pattern analysis and machine intelligence\n" +
"%V 12\n" +
"%N 7\n" +
"%P 629--639\n" +
"%@ \n" +
"%D 1990\n" +
"%I IEEE\n")
cite_info2.doi = "doi: 10.1109/34.56205"
if (self.parameters['method'] == 'DIFF4th'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Anisotropic diffusion of higher order for piecewise-smooth recovery"
)
cite_info2.bibtex = \
("@article{ADF2011,\n" +
"title={An anisotropic fourth-order diffusion filter for image noise removal},\n" +
"author={Mohammad Reza and Hajiaboli},\n" +
"journal={International Journal of Computer Vision},\n" +
"volume={92},\n" +
"number={2},\n" +
"pages={177--191},\n" +
"year={2011},\n" +
"publisher={Springer}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Anisotropic diffusion of higher order for piecewise-smooth recovery\n" +
"%A Mohammad Reza, Hajiaboli\n" +
"%J International Journal of Computer Vision\n" +
"%V 92\n" +
"%N 2\n" +
"%P 177--191\n" +
"%@ \n" +
"%D 2011\n" +
"%I Springer\n")
cite_info2.doi = "doi: 10.1007/s11263-010-0330-1"
if (self.parameters['method'] == 'NLTV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Nonlocal discrete regularization on weighted graphs: a framework for image and manifold processing"
)
cite_info2.bibtex = \
("@article{abd2008,\n" +
"title={Nonlocal discrete regularization on weighted graphs: a framework for image and manifold processing},\n" +
"author={Abderrahim and Lezoray and Bougleux},\n" +
"journal={IEEE Trans. Image Processing},\n" +
"volume={17},\n" +
"number={7},\n" +
"pages={1047--1060},\n" +
"year={2008},\n" +
"publisher={IEEE}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Nonlocal discrete regularization on weighted graphs: a framework for image and manifold processing\n" +
"%A Abderrahim, Lezoray, Bougleux\n" +
"%J IEEE Trans. Image Processing\n" +
"%V 17\n" +
"%N 7\n" +
"%P 1047--1060\n" +
"%@ \n" +
"%D 2008\n" +
"%I IEEE\n")
cite_info2.doi = "doi: 10.1109/TIP.2008.924284"
return [cite_info1, cite_info2]
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("The CCPi-Regularisation toolkit provides a set of variational regularisers (denoisers) which can be embedded in a plug-and-play fashion into proximal splitting methods for image reconstruction. CCPi-RGL comes with algorithms that can satisfy various prior expectations of the reconstructed object, for example being piecewise-constant or piecewise-smooth nature.")
cite_info1.bibtex = \
("@article{kazantsev2019,\n" +
"title={CCPi-Regularisation Toolkit for computed tomographic image reconstruction with proximal splitting algorithms},\n" +
"author={Daniil and Kazantsev, Edoardo and Pasca, Martin and Turner, Philip and Withers},\n" +
"journal={Software X},\n" +
"volume={accepted},\n" +
"number={--},\n" +
"pages={--},\n" +
"year={2019},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T CCPi-Regularisation Toolkit for computed tomographic image reconstruction with proximal splitting algorithms\n" +
"%A Kazantsev, Daniil\n" +
"%A Pasca, Edoardo\n" +
"%A Turner, Martin\n" +
"%A Withers, Philip\n" +
"%J Software X\n" +
"%V --\n" +
"%N --\n" +
"%P --\n" +
"%@ --\n" +
"%D 2019\n" +
"%I Elsevier\n")
cite_info1.doi = "doi: "
if (self.parameters['method'] == 'ROF_TV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("Rudin-Osher-Fatemi explicit PDE minimisation method for smoothed Total Variation regulariser")
cite_info2.bibtex = \
("@article{ROF1992,\n" +
"title={Nonlinear total variation based noise removal algorithms},\n" +
"author={L. Rudin, S. Osher, E. Fatemi},\n" +
"journal={Physica D.},\n" +
"volume={60},\n" +
"number={},\n" +
"pages={259--268},\n" +
"year={1992},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Nonlinear total variation based noise removal algorithms\n" +
"%A Rudin, L.\n" +
"%A Osher, S.\n" +
"%A Fatemi, Fatemi\n" +
"%J Physica D.\n" +
"%V 60\n" +
"%N \n" +
"%P 259--268\n" +
"%@ \n" +
"%D 1992\n" +
"%I Elsevier\n")
cite_info2.doi = "doi: 10.1016/0167-2789(92)90242-F"
if (self.parameters['method'] == 'FGP_TV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("Fast-Gradient-Projection algorithm for Total Variation regulariser")
cite_info2.bibtex = \
("@article{FGP2009,\n" +
"title={Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems},\n" +
"author={Amir and Beck, Mark and Teboulle},\n" +
"journal={IEEE Transactions on Image Processing},\n" +
"volume={18},\n" +
"number={11},\n" +
"pages={2419--2434},\n" +
"year={2009},\n" +
"publisher={IEEE}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems\n" +
"%A Beck, Amir\n" +
"%A Teboulle, Mark.\n" +
"%J IEEE Transactions on Image Processing\n" +
"%V 18\n" +
"%N 11\n" +
"%P 2419--2434\n" +
"%@ \n" +
"%D 2009\n" +
"%I IEEE\n")
cite_info2.doi = "doi: 10.1109/TIP.2009.2028250"
if (self.parameters['method'] == 'SB_TV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("The Split Bregman approach for Total Variation regulariser")
cite_info2.bibtex = \
("@article{SBTV2009,\n" +
"title={The split Bregman method for L1-regularized problems},\n" +
"author={Tom and Goldstein, Stanley and Osher},\n" +
"journal={SIAM journal on imaging sciences},\n" +
"volume={2},\n" +
"number={2},\n" +
"pages={323--343},\n" +
"year={2009},\n" +
"publisher={SIAM}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T The split Bregman method for L1-regularized problems\n" +
"%A Goldstein, Tom\n" +
"%A Osher, Stanley.\n" +
"%J SIAM journal on imaging sciences\n" +
"%V 2\n" +
"%N 2\n" +
"%P 323--343\n" +
"%@ \n" +
"%D 2009\n" +
"%I SIAM\n")
cite_info2.doi = "doi: 10.1137/080725891"
if (self.parameters['method'] == 'TGV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("Total generalized variation regulariser for piecewise-smooth recovery")
cite_info2.bibtex = \
("@article{TGV2010,\n" +
"title={Total generalized variation},\n" +
"author={Kristian and Bredies, Karl and Kunisch, Thomas and Pock},\n" +
"journal={SIAM journal on imaging sciences},\n" +
"volume={3},\n" +
"number={3},\n" +
"pages={492--526},\n" +
"year={2010},\n" +
"publisher={SIAM}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Total generalized variation\n" +
"%A Bredies, Kristian\n" +
"%A Kunisch, Kurl.\n" +
"%A Pock, Thomas.\n" +
"%J SIAM journal on imaging sciences\n" +
"%V 3\n" +
"%N 3\n" +
"%P 492--526\n" +
"%@ \n" +
"%D 2010\n" +
"%I SIAM\n")
cite_info2.doi = "doi: 10.1137/080725891"
if (self.parameters['method'] == 'LLT_ROF'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("Combination for ROF model and LLT for piecewise-smooth recovery")
cite_info2.bibtex = \
("@article{ROFLLT2017,\n" +
"title={Model-based iterative reconstruction using higher-order regularization of dynamic synchrotron data},\n" +
"author={Daniil and Kazantsev, Enyu and Guo, Andre and Phillion, Philip and Withers, Peter and Lee},\n" +
"journal={Measurement Science and Technology},\n" +
"volume={28},\n" +
"number={9},\n" +
"pages={094004},\n" +
"year={2017},\n" +
"publisher={IoP}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Model-based iterative reconstruction using higher-order regularization of dynamic synchrotron data\n" +
"%A Kazantsev, Daniil\n" +
"%A Enyu, Guo.\n" +
"%A Phillion, Andre.\n" +
"%A Withers, Philip.\n" +
"%A Lee, Peter.\n" +
"%J Measurement Science and Technology\n" +
"%V 28\n" +
"%N 9\n" +
"%P 094004\n" +
"%@ \n" +
"%D 2017\n" +
"%I IoP\n")
cite_info2.doi = "doi: 10.1088/1361-6501"
if (self.parameters['method'] == 'NDF'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("Nonlinear or linear duffison as a regulariser ")
cite_info2.bibtex = \
("@article{NDF1990,\n" +
"title={Scale-space and edge detection using anisotropic diffusion},\n" +
"author={Pietro and Perona, Jitendra and Malik},\n" +
"journal={IEEE Transactions on pattern analysis and machine intelligence},\n" +
"volume={12},\n" +
"number={7},\n" +
"pages={629--639},\n" +
"year={1990},\n" +
"publisher={IEEE}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Scale-space and edge detection using anisotropic diffusion\n" +
"%A Pietro, Perona\n" +
"%A Jitendra, Malik.\n" +
"%J IEEE Transactions on pattern analysis and machine intelligence\n" +
"%V 12\n" +
"%N 7\n" +
"%P 629--639\n" +
"%@ \n" +
"%D 1990\n" +
"%I IEEE\n")
cite_info2.doi = "doi: 10.1109/34.56205"
if (self.parameters['method'] == 'DIFF4th'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("Anisotropic diffusion of higher order for piecewise-smooth recovery")
cite_info2.bibtex = \
("@article{ADF2011,\n" +
"title={An anisotropic fourth-order diffusion filter for image noise removal},\n" +
"author={Mohammad Reza and Hajiaboli},\n" +
"journal={International Journal of Computer Vision},\n" +
"volume={92},\n" +
"number={2},\n" +
"pages={177--191},\n" +
"year={2011},\n" +
"publisher={Springer}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Anisotropic diffusion of higher order for piecewise-smooth recovery\n" +
"%A Mohammad Reza, Hajiaboli\n" +
"%J International Journal of Computer Vision\n" +
"%V 92\n" +
"%N 2\n" +
"%P 177--191\n" +
"%@ \n" +
"%D 2011\n" +
"%I Springer\n")
cite_info2.doi = "doi: 10.1007/s11263-010-0330-1"
return [cite_info1, cite_info2]
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("The tomography reconstruction algorithm used in this processing \
pipeline is part of the ASTRA Toolbox")
cite_info1.bibtex = \
("@article{van2016fast,\n" +
"title={Fast and flexible X-ray tomography using the ASTRA \
toolbox},\n" +
"author={van Aarle, Wim and Palenstijn, Willem Jan and Cant, \
Jeroen and Janssens, Eline and Bleichrodt, Folkert and \
Dabravolski, Andrei and De Beenhouwer, Jan and Batenburg, K Joost\
and Sijbers, Jan},\n" +
"journal={Optics Express},\n" +
"volume={24},\n" +
"number={22},\n" +
"pages={25129--25147},\n" +
"year={2016},\n" +
"publisher={Optical Society of America}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T Fast and flexible X-ray tomography using the ASTRA \
toolbox\n" +
"%A van Aarle, Wim\n" +
"%A Palenstijn, Willem Jan\n" +
"%A Cant, Jeroen\n" +
"%A Janssens, Eline\n" +
"%A Bleichrodt, Folkert\n" +
"%A Dabravolski, Andrei\n" +
"%A De Beenhouwer, Jan\n" +
"%A Batenburg, K Joost\n" +
"%A Sijbers, Jan\n" +
"%J Optics Express\n" +
"%V 24\n" +
"%N 22\n" +
"%P 25129-25147\n" +
"%@ 1094-4087\n" +
"%D 2016\n" +
"%I Optical Society of America\n")
cite_info1.doi = "doi: 10.1364/OE.24.025129"
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = \
("The tomography reconstruction algorithm used in this processing \
pipeline is part of the ASTRA Toolbox")
cite_info2.bibtex = \
("@article{van2015astra,\n" +
"title={The ASTRA Toolbox: A platform for advanced algorithm \
development in electron tomography},\n" +
"author={van Aarle, Wim and Palenstijn, Willem Jan and \
De Beenhouwer, Jan and Altantzis, Thomas and Bals, Sara and \
Batenburg, K Joost and Sijbers, Jan},\n" +
"journal={Ultramicroscopy},\n" +
"volume={157},\n" +
"pages={35--47},\n" +
"year={2015},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Numerical removal of ring artifacts in microtomography\n" +
"%A Raven, Carsten\n" +
"%J Review of scientific instruments\n" +
"%V 69\n" +
"%N 8\n" +
"%P 2978-2980\n" +
"%@ 0034-6748\n" +
"%D 1998\n" +
"%I AIP Publishing")
cite_info2.doi = "doi: 10.1364/OE.24.025129"
return [cite_info1, cite_info2]
