Python set_plugin_list Examples

Example #1

File: plugin_runner_test.py Project: DiamondLightSource/Savu

def run_protected_plugin_runner_no_process_list(options, plugin, **kwargs):
    if 'data' in kwargs.keys():
        tu.set_plugin_list(options, plugin, kwargs['data'])
    else:
        tu.set_plugin_list(options, plugin)
    plugin_runner = PluginRunner(options)
    exp = plugin_runner._run_plugin_list()
    return exp

Example #2

def run_protected_plugin_runner_no_process_list(options, plugin, **kwargs):
    if 'data' in list(kwargs.keys()):
        tu.set_plugin_list(options, plugin, kwargs['data'])
    else:
        tu.set_plugin_list(options, plugin)
    plugin_runner = PluginRunner(options)
    exp = plugin_runner._run_plugin_list()
    return exp

Example #3

File: data_test.py Project: zhoutunhe/Savu

    def test_create_smaller_data_block(self):
        options = tu.set_experiment('tomo')
        plugin = 'savu.plugins.reshape.downsample_filter'
        tu.set_plugin_list(options, plugin)

        out_data_name = options['plugin_list'][1]['data']['out_datasets'][0]
        plugin_runner = PluginRunner(options)
        exp = plugin_runner._run_plugin_list()

        self.assertEqual(exp.index['in_data'][out_data_name].get_shape(),
                         (91, 68, 80))

Example #4

File: astra_multiple_parameter_test.py Project: markbasham/Savu

    def framework_options_setup(self):
        key1 = 'reconstruction_type'
        key2 = 'number_of_iterations'
        key3 = 'in_datasets'
        key4 = 'out_datasets'
        params = {key1: 'FBP;CGLS', key2: '1;2;3', key3: 'tomo', key4: 'tomo'}

        options = tu.set_experiment('tomo')
        plugin = 'savu.plugins.reconstructions.astra_recons.astra_recon_cpu'
        tu.set_plugin_list(options, plugin, [{}, params, {}])
        return options

Example #5

File: data_test.py Project: DiamondLightSource/Savu

    def test_create_smaller_data_block(self):
        options = tu.set_experiment('tomo')
        plugin = 'savu.plugins.reshape.downsample_filter'
        tu.set_plugin_list(options, plugin)

        out_data_name = options['plugin_list'][1]['data']['out_datasets'][0]
        plugin_runner = PluginRunner(options)
        exp = plugin_runner._run_plugin_list()

        self.assertEqual(exp.index['in_data'][out_data_name].get_shape(),
                         (91, 68, 80))

Example #6

File: multiple_parameter_test.py Project: r-atwood/Savu

    def framework_options_setup(self):
        key1 = 'reconstruction_type'
        key2 = 'number_of_iterations'
        key3 = 'in_datasets'
        key4 = 'out_datasets'
        params = {key1: 'FBP;CGLS', key2: '1;2;3', key3: 'tomo', key4: 'tomo'}

        options = tu.set_experiment('tomo')
        plugin = 'savu.plugins.reconstructions.astra_recons.astra_recon_cpu'
        tu.set_plugin_list(options, plugin, [{}, params, {}])
        return options

Example #7

File: multiple_parameter_test.py Project: FedeMPouzols/Savu

    def framework_options_setup(self):
        key1 = "preview"
        key2 = "FBP_filter"
        key3 = "center_of_rotation"
        key4 = "in_datasets"
        key5 = "out_datasets"
        params = {key1: [":", "0", ":"], key2: "ram-lak;hamming", key3: "85.0;85.5;86.0", key4: "tomo", key5: "tomo"}

        options = tu.set_experiment("tomo")
        plugin = "savu.plugins.reconstructions.astra_recons.astra_recon_cpu"
        tu.set_plugin_list(options, plugin, [{}, params, {}])
        return options

Example #8

File: plugin_runner_test.py Project: r-atwood/Savu

def run_protected_plugin_runner_no_process_list(options, plugin, **kwargs):
    try:
        if 'data' in kwargs.keys():
            tu.set_plugin_list(options, plugin, kwargs['data'])
        else:
            tu.set_plugin_list(options, plugin)
        plugin_runner = PluginRunner(options)
        exp = plugin_runner.run_plugin_list(options)
        return exp
    except ImportError as e:
        print("Failed to run test as libraries not available (%s)," % (e) +
              " passing test")
        pass

Example #9

File: multiple_parameter_test.py Project: r-atwood/Savu

    def framework_options_setup(self):
        key1 = 'interpolation'
        key2 = 'iterations'
        key3 = 'in_datasets'
        key4 = 'out_datasets'
        key5 = 'sino_pad_width'
        params = {key1: 'nearest;linear', key2: '1;2;3', key3: 'tomo',
                  key4: 'tomo', key5: 0}

        options = tu.set_experiment('tomo')
        plugin = 'savu.plugins.reconstructions.scikitimage_sart'
        tu.set_plugin_list(options, plugin, [{}, params, {}])
        return options

Example #10

File: multiple_parameter_test.py Project: DiamondLightSource/Savu

    def framework_options_setup(self):
        key1 = 'preview'
        key2 = 'projector'
        key3 = 'centre_of_rotation'
        key4 = 'in_datasets'
        key5 = 'out_datasets'
        key6 = 'force_zero'
        params = {key1: [':', '0', ':'], key2: 'line;strip',
                  key3: '85.0;85.5;86.0', key4: 'tomo', key5: 'tomo',
                  key6: '[None, None]'}

        options = tu.set_experiment('tomo')
        plugin = 'savu.plugins.reconstructions.astra_recons.astra_recon_cpu'
        tu.set_plugin_list(options, plugin, [{}, params, {}])
        return options

Example #11

    def framework_options_setup(self):
        key1 = 'n_iterations'
        key2 = 'algorithm'
        key3 = 'in_datasets'
        key4 = 'out_datasets'
        params = OrderedDict({
            key1: '1;2;3',
            key2: 'FBP;CGLS',
            key3: 'tomo',
            key4: 'tomo'
        })

        options = tu.set_experiment('tomo')
        plugin = 'savu.plugins.reconstructions.astra_recons.astra_recon_cpu'
        tu.set_plugin_list(options, plugin, [{}, params, {}])
        return options

Example #12

    def framework_options_setup(self):
        key1 = 'interpolation'
        key2 = 'iterations'
        key3 = 'in_datasets'
        key4 = 'out_datasets'
        key5 = 'sino_pad_width'
        params = {
            key1: 'nearest;linear',
            key2: '1;2;3',
            key3: 'tomo',
            key4: 'tomo',
            key5: 0
        }

        options = tu.set_experiment('tomo')
        plugin = 'savu.plugins.reconstructions.scikitimage_sart'
        tu.set_plugin_list(options, plugin, [{}, params, {}])
        return options

Example #13

    def framework_options_setup(self):
        key1 = 'preview'
        key2 = 'FBP_filter'
        key3 = 'center_of_rotation'
        key4 = 'in_datasets'
        key5 = 'out_datasets'
        params = {
            key1: [':', '0', ':'],
            key2: 'ram-lak;hamming',
            key3: '85.0;85.5;86.0',
            key4: 'tomo',
            key5: 'tomo'
        }

        options = tu.set_experiment('tomo')
        plugin = 'savu.plugins.reconstructions.astra_recons.astra_recon_cpu'
        tu.set_plugin_list(options, plugin, [{}, params, {}])
        return options

Example #14

File: multiple_parameter_test.py Project: zhoutunhe/Savu

    def framework_options_setup(self):
        key1 = 'preview'
        key2 = 'projector'
        key3 = 'centre_of_rotation'
        key4 = 'in_datasets'
        key5 = 'out_datasets'
        key6 = 'force_zero'
        params = {
            key1: [':', '0', ':'],
            key2: 'line;strip',
            key3: '85.0;85.5;86.0',
            key4: 'tomo',
            key5: 'tomo',
            key6: '[None, None]'
        }

        options = tu.set_experiment('tomo')
        plugin = 'savu.plugins.reconstructions.astra_recons.astra_recon_cpu'
        tu.set_plugin_list(options, plugin, [{}, params, {}])
        return options