import fsps from scombine.sfhutils import load_angst_sfh from scombine.dust import sexAmodel import scombine.bursty_sfh as bsp from sedpy import attenuation, observate # Instantiate the SPS object and make any changes to the parameters here sps = fsps.StellarPopulation(zcontinuous=1) sps.params['logzsol'] = -1.0 # Load the input SFH, and set any bursts if desired (set f_burst=0 # to not add bursts) filename = 'sfhs/ddo71.lowres.ben.v1.sfh' f_burst, fwhm_burst, contrast = 0.5, 0.05 * 1e9, 5 sfh = load_angst_sfh(filename) sfh['t1'] = 10.**sfh['t1'] sfh['t2'] = 10.**sfh['t2'] sfh['sfr'][0] *= 1 - (sfh['t1'][0]/sfh['t2'][0]) sfh[0]['t1'] = 0. mtot = ((sfh['t2'] - sfh['t1']) * sfh['sfr']).sum() # choose lookback times to generate lookback_time = [0, 1e8] # generate a high temporal resolution SFH, with bursts if f_burst > 0 lt, sfr, tb = bsp.burst_sfh(sfh=sfh, fwhm_burst=fwhm_burst, f_burst=f_burst, contrast=contrast) # get the interpolation weights. This does not have to be run in # general (it is run interior to bursty_sps) unless you are # debugging or for plotting purposes aw = bsp.sfh_weights(lt, sfr, 10**sps.ssp_ages, lookback_time=lookback_time)
filterlist = observate.load_filters(filternamelist)
maggies_to_cgs = 10**(-0.4*(2.406 + 5*np.log10([f.wave_effective for f in filterlist])))
dm =24.47
t_lookback = [0.0, 1e8]
tl = ['present','100 Myr ago']
files = glob.glob('./sfhs/*sfh')
objname = [os.path.basename(f).split('.')[0] for f in files]
pl.figure()
for i, filen in enumerate(files):
av, dav = 0.1, 0.1
#read the binned sfh, put in linear units
sfh = utils.load_angst_sfh(filen)
sfh['t1'] = 10.**sfh['t1']
sfh['t2'] = 10.**sfh['t2']
sfh['sfr'][0] *= 1 - (sfh['t1'][0]/sfh['t2'][0])
sfh[0]['t1'] = 0.
mtot = ((sfh['t2'] - sfh['t1']) * sfh['sfr']).sum()
#convert into a high resolution sfh, with *no* intrabin sfr variations
lt, sfr, fb = bsp.burst_sfh(fwhm_burst=0.05, f_burst=0., contrast=1.,
sfh=sfh, bin_res=20.)
# Get the attenuated spectra
# and IR luminosities
wave, spec, mass, lir = bsp.bursty_sps(lt, sfr, sps, lookback_time=t_lookback,
av=av, dav=dav, nsplit=30)
for j, jt in enumerate(t_lookback):
import fsps from scombine.sfhutils import load_angst_sfh from scombine.dust import sexAmodel import scombine.bursty_sfh as bsp from sedpy import attenuation, observate # Instantiate the SPS object and make any changes to the parameters here sps = fsps.StellarPopulation(zcontinuous=1) sps.params["logzsol"] = -1.0 # Load the input SFH, and set any bursts if desired (set f_burst=0 # to not add bursts) filename = "sfhs/ddo71.lowres.ben.v1.sfh" f_burst, fwhm_burst, contrast = 0.5, 0.05 * 1e9, 5 sfh = load_angst_sfh(filename) sfh["t1"] = 10.0 ** sfh["t1"] sfh["t2"] = 10.0 ** sfh["t2"] sfh["sfr"][0] *= 1 - (sfh["t1"][0] / sfh["t2"][0]) sfh[0]["t1"] = 0.0 mtot = ((sfh["t2"] - sfh["t1"]) * sfh["sfr"]).sum() # choose lookback times to generate lookback_time = [0, 1e8] # generate a high temporal resolution SFH, with bursts if f_burst > 0 lt, sfr, tb = bsp.burst_sfh(sfh=sfh, fwhm_burst=fwhm_burst, f_burst=f_burst, contrast=contrast) # get the interpolation weights. This does not have to be run in # general (it is run interior to bursty_sps) unless you are # debugging or for plotting purposes aw = bsp.sfh_weights(lt, sfr, 10 ** sps.ssp_ages, lookback_time=lookback_time)
def examples(filename='demo/sfhs/ddo75.lowres.ben.v1.sfh',
lookback_time=[0.0, 1e9, 10e9]):
"""
A quick test and demonstration of the algorithms.
"""
import matplotlib.pyplot as pl
import fsps
from scombine.sfhutils import load_angst_sfh
# Instantiate the SPS object and make any changes to the parameters here
sps = fsps.StellarPopulation(zcontinuous=1)
sps.params['logzsol'] = -1.0
# Load the input SFH, and set any bursts if desired (set f_burst=0
# to not add bursts)
f_burst, fwhm_burst, contrast = 0.5, 0.05 * 1e9, 5
sfh = load_angst_sfh(filename)
sfh['t1'] = 10.**sfh['t1']
sfh['t2'] = 10.**sfh['t2']
sfh['sfr'][0] *= 1 - (sfh['t1'][0]/sfh['t2'][0])
sfh[0]['t1'] = 0.
mtot = ((sfh['t2'] - sfh['t1']) * sfh['sfr']).sum()
# generate a high temporal resolution SFH, with bursts if f_burst > 0
lt, sfr, tb = burst_sfh(sfh=sfh, fwhm_burst=fwhm_burst, f_burst=f_burst, contrast=contrast)
# get the interpolation weights. This does not have to be run in
# general (it is run interior to bursty_sps) unless you are
# debugging or for plotting purposes
aw = sfh_weights(lt, sfr, 10**sps.ssp_ages, lookback_time=lookback_time)
# get the intrinsic spectra at the lookback_times specified.
wave, spec, mstar, _ = bursty_sps(lt, sfr, sps, lookback_time=lookback_time)
# get reddened spectra, Calzetti foreground screen
wave, red_spec, _, lir = bursty_sps(lt, sfr, sps, lookback_time=lookback_time,
dust_curve=attenuation.calzetti, av=1, dav=0)
# get reddened spectra, SexA differntial extinction plus SMC
from scombine.dust import sexAmodel
dav = sexAmodel(davmax=1.0, ages=10**sps.ssp_ages)
wave, red_spec, _, lir = bursty_sps(lt, sfr, sps, lookback_time=lookback_time,
dust_curve=attenuation.smc, av=1, dav=dav)
# Get intrinsic spectrum including an age metallicity relation
def amr(ages, **extras):
"""This should take an array of ages (linear years) and return an array
of metallicities (units of log(Z/Z_sun)
"""
logz_array = -1.0 * np.ones_like(ages)
return logz_array
wave, spec, mstar, _ = bursty_sps(lt, sfr, sps, lookback_time=lookback_time,
logzsol=amr(10**sps.ssp_ages, sfh=sfh))
# Output plotting.
pl.figure()
for i,t in enumerate(lookback_time):
pl.plot(wave, spec[i,:], label = r'$t_{{lookback}} = ${0:5.1f} Gyr'.format(t/1e9))
pl.legend()
pl.xlim(1e3,1e4)
pl.xlabel('wave')
pl.ylabel(r'$F_\lambda$')
fig, ax = pl.subplots(2,1)
for i,t in enumerate(lookback_time):
ax[1].plot(10**sps.ssp_ages, aw[i,:], marker='o', markersize=2,
label=r'$t_{{lookback}} = ${0:5.1f} Gyr'.format(t/1e9))
mstring = 'm_formed({0:3.1f}Gyr)={1}, m_formed(total)={2}, m_formed({0:3.1f}Gyr)/m_formed(total)={3}'
print(mstring.format(t/1e9, aw[i,:].sum(), mtot, aw[i,:].sum()/mtot))
print('m_star({0:3.1f}Gyr)={1}'.format(t/1e9, mstar[i]))
ax[1].set_xlabel('SSP age - lookback time')
ax[1].set_ylabel('Mass')
ax[1].legend(loc = 'upper left')
ax[0].plot(lt, sfr, 'k')
ax[0].set_xlabel('lookback time')
ax[0].set_ylabel('SFR')
pstring = 'f$_{{burst}}={0:3.1f}$, fwhm$_{{burst}}=${1:3.0f}Myr, contrast ={2}'
ax[0].set_title(pstring.format(f_burst, fwhm_burst/1e6, contrast))
for t in lookback_time:
ax[0].axvline(x = t, color = 'r', linestyle =':', linewidth = 5)
pl.show()
def examples(filename='demo/sfhs/ddo75.lowres.ben.v1.sfh',
lookback_time=[0.0, 1e9, 10e9]):
"""
A quick test and demonstration of the algorithms.
"""
import matplotlib.pyplot as pl
import fsps
from scombine.sfhutils import load_angst_sfh
# Instantiate the SPS object and make any changes to the parameters here
sps = fsps.StellarPopulation(zcontinuous=1)
sps.params['logzsol'] = -1.0
# Load the input SFH, and set any bursts if desired (set f_burst=0
# to not add bursts)
f_burst, fwhm_burst, contrast = 0.5, 0.05 * 1e9, 5
sfh = load_angst_sfh(filename)
sfh['t1'] = 10.**sfh['t1']
sfh['t2'] = 10.**sfh['t2']
sfh['sfr'][0] *= 1 - (sfh['t1'][0] / sfh['t2'][0])
sfh[0]['t1'] = 0.
mtot = ((sfh['t2'] - sfh['t1']) * sfh['sfr']).sum()
# generate a high temporal resolution SFH, with bursts if f_burst > 0
lt, sfr, tb = burst_sfh(sfh=sfh,
fwhm_burst=fwhm_burst,
f_burst=f_burst,
contrast=contrast)
# get the interpolation weights. This does not have to be run in
# general (it is run interior to bursty_sps) unless you are
# debugging or for plotting purposes
aw = sfh_weights(lt, sfr, 10**sps.ssp_ages, lookback_time=lookback_time)
# get the intrinsic spectra at the lookback_times specified.
wave, spec, mstar, _ = bursty_sps(lt,
sfr,
sps,
lookback_time=lookback_time)
# get reddened spectra, Calzetti foreground screen
wave, red_spec, _, lir = bursty_sps(lt,
sfr,
sps,
lookback_time=lookback_time,
dust_curve=attenuation.calzetti,
av=1,
dav=0)
# get reddened spectra, SexA differntial extinction plus SMC
from scombine.dust import sexAmodel
dav = sexAmodel(davmax=1.0, ages=10**sps.ssp_ages)
wave, red_spec, _, lir = bursty_sps(lt,
sfr,
sps,
lookback_time=lookback_time,
dust_curve=attenuation.smc,
av=1,
dav=dav)
# Get intrinsic spectrum including an age metallicity relation
def amr(ages, **extras):
"""This should take an array of ages (linear years) and return an array
of metallicities (units of log(Z/Z_sun)
"""
logz_array = -1.0 * np.ones_like(ages)
return logz_array
wave, spec, mstar, _ = bursty_sps(lt,
sfr,
sps,
lookback_time=lookback_time,
logzsol=amr(10**sps.ssp_ages, sfh=sfh))
# Output plotting.
pl.figure()
for i, t in enumerate(lookback_time):
pl.plot(wave,
spec[i, :],
label=r'$t_{{lookback}} = ${0:5.1f} Gyr'.format(t / 1e9))
pl.legend()
pl.xlim(1e3, 1e4)
pl.xlabel('wave')
pl.ylabel(r'$F_\lambda$')
fig, ax = pl.subplots(2, 1)
for i, t in enumerate(lookback_time):
ax[1].plot(10**sps.ssp_ages,
aw[i, :],
marker='o',
markersize=2,
label=r'$t_{{lookback}} = ${0:5.1f} Gyr'.format(t / 1e9))
mstring = 'm_formed({0:3.1f}Gyr)={1}, m_formed(total)={2}, m_formed({0:3.1f}Gyr)/m_formed(total)={3}'
print(
mstring.format(t / 1e9, aw[i, :].sum(), mtot,
aw[i, :].sum() / mtot))
print('m_star({0:3.1f}Gyr)={1}'.format(t / 1e9, mstar[i]))
ax[1].set_xlabel('SSP age - lookback time')
ax[1].set_ylabel('Mass')
ax[1].legend(loc='upper left')
ax[0].plot(lt, sfr, 'k')
ax[0].set_xlabel('lookback time')
ax[0].set_ylabel('SFR')
pstring = 'f$_{{burst}}={0:3.1f}$, fwhm$_{{burst}}=${1:3.0f}Myr, contrast ={2}'
ax[0].set_title(pstring.format(f_burst, fwhm_burst / 1e6, contrast))
for t in lookback_time:
ax[0].axvline(x=t, color='r', linestyle=':', linewidth=5)
pl.show()
maggies_to_cgs = 10**(
-0.4 * (2.406 + 5 * np.log10([f.wave_effective for f in filterlist])))
dm = 24.47
t_lookback = [0.0, 1e8]
tl = ['present', '100 Myr ago']
files = glob.glob('./sfhs/*sfh')
objname = [os.path.basename(f).split('.')[0] for f in files]
pl.figure()
for i, filen in enumerate(files):
av, dav = 0.1, 0.1
#read the binned sfh, put in linear units
sfh = utils.load_angst_sfh(filen)
sfh['t1'] = 10.**sfh['t1']
sfh['t2'] = 10.**sfh['t2']
sfh['sfr'][0] *= 1 - (sfh['t1'][0] / sfh['t2'][0])
sfh[0]['t1'] = 0.
mtot = ((sfh['t2'] - sfh['t1']) * sfh['sfr']).sum()
#convert into a high resolution sfh, with *no* intrabin sfr variations
lt, sfr, fb = bsp.burst_sfh(fwhm_burst=0.05,
f_burst=0.,
contrast=1.,
sfh=sfh,
bin_res=20.)
# Get the attenuated spectra
# and IR luminosities