def test_clinsig_human_no_clnsig():
## GIVEN a variant with clinsig info
var_obj = {}
## WHEN getting the clinsig
clinsigs = clinsig_human(var_obj)
## THEN assert there where no objects returned
i = 0
for i, obj in enumerate(clinsigs, 1):
pass
assert i == 0
def test_clinsig_human_no_accession():
## GIVEN a variant with clinsig info wothout accession number
var_obj = {
"clnsig": [{"value": "Likely benign", "revstat": "criteria_provided, single submitter"}]
}
## WHEN getting the clinsig
clinsigs = clinsig_human(var_obj)
## THEN assert there where no objects returned since we skip those wothout accession
i = 0
for i, obj in enumerate(clinsigs, 1):
pass
assert i == 0
def test_clinsig_human():
## GIVEN a variant with clinsig info
var_obj = {
"clnsig": [{
"value": "Likely benign",
"accession": 335067,
"revstat": "criteria_provided, single submitter",
}]
}
## WHEN getting the clinsig
clinsigs = clinsig_human(var_obj)
## THEN assert there where no objects returned
clinsig_obj = next(clinsigs)
assert clinsig_obj["human"] == "Likely benign"
assert clinsig_obj[
"link"] == "https://www.ncbi.nlm.nih.gov/clinvar/variation/335067"