Python is_benign Examples

Example #1

def test_is_benign_2():
    """Second criterias for benign:
    
    Benign
      (ii) ≥2 Strong (BS1–BS4)

    """
    # GIVEN values that fulfill the (ii) criteria for benign
    ba = False
    bs_terms = ["BS1", "BS2"]
    ## WHEN performing the evaluation
    res = is_benign(ba, bs_terms)
    ## THEN assert the criterias are fullfilled
    assert res

    bs_terms = ["BS1"]
    res = is_benign(ba, bs_terms)
    assert not res

Example #2

File: test_acmg.py Project: Clinical-Genomics/scout

def test_is_benign_2():
    """Second criterias for benign:
    
    Benign
      (ii) ≥2 Strong (BS1–BS4)

    """
    # GIVEN values that fulfill the (ii) criteria for benign
    ba = False
    bs_terms = ['BS1', 'BS2']
    ## WHEN performing the evaluation
    res = is_benign(ba, bs_terms)
    ## THEN assert the criterias are fullfilled
    assert res
    
    bs_terms = ['BS1']
    res = is_benign(ba, bs_terms)
    assert not res

Example #3

def test_is_benign_1():
    """First criterias for benign:
    
    Benign
      (i) 1 Stand-alone (BA1) OR

    """
    # GIVEN values that fulfill the (i) criteria for benign
    ba = True
    bs_terms = []
    ## WHEN performing the evaluation
    res = is_benign(ba, bs_terms)
    ## THEN assert the criterias are fullfilled
    assert res

    ba = False
    res = is_benign(ba, bs_terms)
    assert not res

Example #4

File: test_acmg.py Project: Clinical-Genomics/scout

def test_is_benign_1():
    """First criterias for benign:
    
    Benign
      (i) 1 Stand-alone (BA1) OR

    """
    # GIVEN values that fulfill the (i) criteria for benign
    ba = True
    bs_terms = []
    ## WHEN performing the evaluation
    res = is_benign(ba, bs_terms)
    ## THEN assert the criterias are fullfilled
    assert res
    
    ba = False
    res = is_benign(ba, bs_terms)
    assert not res