Python extra_aaindex Examples

Example #1

File: pse.py Project: bioinformatics-hitsz/Pse-in-One

def extend_aaindex(filename):
    """Extend the user-defined AAIndex from user's file.
    :return: a list of AAIndex obj.
    """
    from scrip.extract_aaindex import extra_aaindex, norm_index_vals

    aaindex = extra_aaindex(filename)
    for ind, e in enumerate(aaindex):
        aaindex[ind] = AAIndex(e.head, norm_index_vals(e.index_dict))

    return aaindex

Example #2

def extend_aaindex(filename):
    """Extend the user-defined AAIndex from user's file.
    :return: a list of AAIndex obj.
    """
    from scrip.extract_aaindex import extra_aaindex, norm_index_vals

    aaindex = extra_aaindex(filename)
    for ind, e in enumerate(aaindex):
        aaindex[ind] = AAIndex(e.head, norm_index_vals(e.index_dict))

    return aaindex