Python get_queried_genes Examples

Example #1

File: awesomebar_api.py Project: macarthur-lab/seqr

def _get_matching_genes(user, query):
    """Returns genes that match the given query string, and that the user can view.

    Args:
       user: Django user
       query: String typed into the awesomebar
    Returns:
       Sorted list of matches where each match is a dictionary of strings
    """
    result = []
    for g in get_queried_genes(query, MAX_RESULTS_PER_CATEGORY):
        if query.lower() in g['gene_id'].lower():
            title = g['gene_id']
            description = g['gene_symbol']
        else:
            title = g['gene_symbol']
            description = g['gene_id']

        result.append({
            'key': g['gene_id'],
            'title': title,
            'description': '('+description+')' if description else '',
            'href': '/gene_info/'+g['gene_id'],
        })

    return result

Example #2

File: awesomebar_api.py Project: xirasasa/seqr

def _get_matching_genes(user, query):
    """Returns genes that match the given query string, and that the user can view.

    Args:
       user: Django user
       query: String typed into the awesomebar
    Returns:
       Sorted list of matches where each match is a dictionary of strings
    """
    result = []
    for g in get_queried_genes(query, MAX_RESULTS_PER_CATEGORY):
        if query.lower() in g['gene_id'].lower():
            title = g['gene_id']
            description = g['gene_symbol']
        else:
            title = g['gene_symbol']
            description = g['gene_id']

        result.append({
            'key':
            g['gene_id'],
            'title':
            title,
            'description':
            '(' + description + ')' if description else '',
            'href':
            '/gene_info/' + g['gene_id'],
        })

    return result