def update_variant_tags_handler(request, variant_guid):
saved_variant = SavedVariant.objects.get(guid=variant_guid)
check_permissions(saved_variant.project, request.user, CAN_EDIT)
request_json = json.loads(request.body)
updated_tags = request_json.get('tags', [])
updated_functional_data = request_json.get('functionalData', [])
# Update tags
existing_tag_guids = [tag['tagGuid'] for tag in updated_tags if tag.get('tagGuid')]
new_tags = [tag for tag in updated_tags if not tag.get('tagGuid')]
for tag in saved_variant.varianttag_set.exclude(guid__in=existing_tag_guids):
delete_seqr_model(tag)
for tag in new_tags:
variant_tag_type = VariantTagType.objects.get(
Q(name=tag['name']),
Q(project=saved_variant.project) | Q(project__isnull=True)
)
create_seqr_model(
VariantTag,
saved_variant=saved_variant,
variant_tag_type=variant_tag_type,
search_parameters=request_json.get('searchParameters'),
created_by=request.user,
)
# Update functional data
existing_functional_guids = [tag['tagGuid'] for tag in updated_functional_data if tag.get('tagGuid')]
for tag in saved_variant.variantfunctionaldata_set.exclude(guid__in=existing_functional_guids):
delete_seqr_model(tag)
for tag in updated_functional_data:
if tag.get('tagGuid'):
tag_model = VariantFunctionalData.objects.get(
guid=tag.get('tagGuid'),
functional_data_tag=tag.get('name'),
saved_variant=saved_variant
)
update_model_from_json(tag_model, tag, allow_unknown_keys=True)
else:
create_seqr_model(
VariantFunctionalData,
saved_variant=saved_variant,
functional_data_tag=tag.get('name'),
metadata=tag.get('metadata'),
search_parameters=request_json.get('searchParameters'),
created_by=request.user,
)
return create_json_response({
variant_guid: {
'tags': [get_json_for_variant_tag(tag) for tag in saved_variant.varianttag_set.all()],
'functionalData': [get_json_for_variant_functional_data(tag) for tag in saved_variant.variantfunctionaldata_set.all()]
}
})
def test_json_for_variant_functional_data(self):
tag = VariantFunctionalData.objects.first()
json = get_json_for_variant_functional_data(tag)
fields = {
'tagGuid', 'name', 'color', 'metadata', 'metadataTitle', 'lastModifiedDate', 'createdBy'
}
self.assertSetEqual(set(json.keys()), fields)
def test_json_for_variant_functional_data(self):
tag = VariantFunctionalData.objects.first()
json = get_json_for_variant_functional_data(tag)
fields = {
'tagGuid', 'name', 'color', 'metadata', 'metadataTitle', 'lastModifiedDate', 'createdBy'
}
self.assertSetEqual(set(json.keys()), fields)
def update_variant_tags_handler(request, variant_guid):
saved_variant = SavedVariant.objects.get(guid=variant_guid)
check_permissions(saved_variant.family.project, request.user, CAN_VIEW)
request_json = json.loads(request.body)
updated_tags = request_json.get('tags', [])
updated_functional_data = request_json.get('functionalData', [])
# Update tags
existing_tag_guids = [
tag['tagGuid'] for tag in updated_tags if tag.get('tagGuid')
]
saved_variant.varianttag_set.exclude(guid__in=existing_tag_guids).delete()
_create_new_tags(saved_variant, request_json, request.user)
# Update functional data
existing_functional_guids = [
tag['tagGuid'] for tag in updated_functional_data if tag.get('tagGuid')
]
saved_variant.variantfunctionaldata_set.exclude(
guid__in=existing_functional_guids).delete()
for tag in updated_functional_data:
if tag.get('tagGuid'):
tag_model = VariantFunctionalData.objects.get(
guid=tag.get('tagGuid'),
functional_data_tag=tag.get('name'),
saved_variant=saved_variant)
update_model_from_json(tag_model, tag, allow_unknown_keys=True)
else:
VariantFunctionalData.objects.create(
saved_variant=saved_variant,
functional_data_tag=tag.get('name'),
metadata=tag.get('metadata'),
search_hash=request_json.get('searchHash'),
created_by=request.user,
)
return create_json_response({
'savedVariantsByGuid': {
variant_guid: {
'tags': [
get_json_for_variant_tag(tag)
for tag in saved_variant.varianttag_set.all()
],
'functionalData': [
get_json_for_variant_functional_data(tag)
for tag in saved_variant.variantfunctionaldata_set.all()
]
}
}
})
def update_variant_tags_handler(request, variant_guid):
saved_variant = SavedVariant.objects.get(guid=variant_guid)
check_permissions(saved_variant.project, request.user, CAN_VIEW)
request_json = json.loads(request.body)
updated_tags = request_json.get('tags', [])
updated_functional_data = request_json.get('functionalData', [])
# Update tags
existing_tag_guids = [tag['tagGuid'] for tag in updated_tags if tag.get('tagGuid')]
for tag in saved_variant.varianttag_set.exclude(guid__in=existing_tag_guids):
delete_seqr_model(tag)
_create_new_tags(saved_variant, request_json, request.user)
# Update functional data
existing_functional_guids = [tag['tagGuid'] for tag in updated_functional_data if tag.get('tagGuid')]
for tag in saved_variant.variantfunctionaldata_set.exclude(guid__in=existing_functional_guids):
delete_seqr_model(tag)
for tag in updated_functional_data:
if tag.get('tagGuid'):
tag_model = VariantFunctionalData.objects.get(
guid=tag.get('tagGuid'),
functional_data_tag=tag.get('name'),
saved_variant=saved_variant
)
update_model_from_json(tag_model, tag, allow_unknown_keys=True)
else:
create_seqr_model(
VariantFunctionalData,
saved_variant=saved_variant,
functional_data_tag=tag.get('name'),
metadata=tag.get('metadata'),
search_hash=request_json.get('searchHash'),
created_by=request.user,
)
return create_json_response({'savedVariantsByGuid': {
variant_guid: {
'tags': [get_json_for_variant_tag(tag) for tag in saved_variant.varianttag_set.all()],
'functionalData': [get_json_for_variant_functional_data(tag) for tag in saved_variant.variantfunctionaldata_set.all()]
}
}})
