def test_chr2_sequence(self):
expected_seq = "tgtccacgcgcggatgtcgt"
seq = Chromosome(2).sequence(237513040, 237513060)
self.assertEqual(expected_seq.upper(), seq)
def test_RSRS(self):
expected = 'GGAC'
seq = Chromosome('NC_001807.4').sequence(750, 754)
self.assertEqual(expected, seq)
def test_chr1_sequence(self):
expected_seq = "AATCTAAAAAACTGTCAGAT"
seq = Chromosome(1).sequence(243400000, 243400020)
self.assertEqual(expected_seq.upper(), seq)
def test_chr16_sequence(self):
expected_seq = "CTTTCAGCACAGGGCTGTGA"
seq = Chromosome(16).sequence(89862313, 89862333)
self.assertEqual(expected_seq, seq)
def test_chr17_ctg5_hap1(self):
expected = "TTTTGGCTACAATAATTCTT"
seq = Chromosome('chr17_ctg5_hap1').sequence(3000, 3020)
self.assertEqual(expected, seq)
def test_chr5_sequence(self):
expected_seq = "CTTTACTCCACTCATATTCT"
seq = Chromosome(5).sequence(158879589, 158879609)
self.assertEqual(expected_seq, seq)
def test_chr7_sequence(self):
expected_seq = "CTTGCTCTCATCCTCCGGGT"
seq = Chromosome(7).sequence(158896447, 158896467)
self.assertEqual(expected_seq, seq)
def test_chr22_sequence(self):
expected_seq = "AGACGCCGCCCCTGTTCATG"
seq = Chromosome(22).sequence(50552076, 50552096)
self.assertEqual(expected_seq, seq)
def test_chrX_sequence(self):
expected_seq = "GCAAGCAGCAGGATGGGGCC"
seq = Chromosome("X").sequence(152811545, 152811565)
self.assertEqual(expected_seq, seq)
def test_chr20_sequence(self):
expected_seq = "CTGCCCAAGTGCTCCTGGAG"
seq = Chromosome(20).sequence(55803284, 55803304)
self.assertEqual(expected_seq, seq)
def test_chr21_sequence(self):
expected_seq = "GGCTGGTGTGGCACATGATG"
seq = Chromosome(21).sequence(46074515, 46074535)
self.assertEqual(expected_seq, seq)
def test_chr19_sequence(self):
expected_seq = "GGCTGGTTAAACTCGGGGTC"
seq = Chromosome(19).sequence(55798374, 55798394)
self.assertEqual(expected_seq, seq)
def test_chr18_sequence(self):
expected_seq = "CGAACACTTCGTTGTCCTCT"
seq = Chromosome(18).sequence(74778253, 74778273)
self.assertEqual(expected_seq, seq)
def test_chr17_sequence(self):
expected_seq = "TGGAGCTGGAGCCACAGGTC"
seq = Chromosome(17).sequence(80014178, 80014198)
self.assertEqual(expected_seq, seq)
def test_chr3_sequence(self):
expected_seq = "ctctttcgcccaggctggag"
seq = Chromosome(3).sequence(190352536, 190352556)
self.assertEqual(expected_seq.upper(), seq)
def test_chrY_sequence(self):
expected_seq = "CTGAACGTGCTGAGTTACAG"
seq = Chromosome("Y").sequence(25325643, 25325663)
self.assertEqual(expected_seq, seq)
def test_chr4_sequence(self):
expected_seq = "ttggagccaaggtctcactc"
seq = Chromosome(4).sequence(184622015, 184622035)
self.assertEqual(expected_seq.upper(), seq)
def test_chrMT_sequence(self):
expected_seq = "ATTGTACGGTACCATAAATA"
seq = Chromosome("MT").sequence(16121, 16141)
self.assertEqual(expected_seq, seq)
def test_chr6_sequence(self):
expected_seq = "AGGTGGTAGCCCAGTGGTGC"
seq = Chromosome(6).sequence(158882594, 158882614)
self.assertEqual(expected_seq, seq)
def test_chr6_dbb_hap3(self):
expected = "ACAATTAGAAATACTAGGAG"
seq = Chromosome('chr6_dbb_hap3').sequence(3000, 3020)
self.assertEqual(expected, seq)
def test_chr8_sequence(self):
expected_seq = "CTGTCTCCACTGCAGGGCTC"
seq = Chromosome(8).sequence(139508913, 139508933)
self.assertEqual(expected_seq, seq)
def test_chr15_sequence(self):
expected_seq = "ttcaatcactgatacccttt"
seq = Chromosome(15).sequence(99921491, 99921511)
self.assertEqual(expected_seq.upper(), seq)
