def transform_incoming(self, son, collection):
for (key, value) in son.items():
if isinstance(value, SeqRecord):
son[key] = simplifySeqRecord(value)
elif isinstance(value, dict):
son[key] = self.transform_incoming(value, collection)
return son
def transform_incoming(self,son,collection):
for (key,value) in son.items():
if isinstance(value,SeqRecord):
son[key] = simplifySeqRecord(value)
elif isinstance(value,dict):
son[key] = self.transform_incoming(value,collection)
return son
def encode_chain(chain):
document = simplifySeqRecord(chain)
if hasattr(chain,'v'): document['v'] = chain.v
if hasattr(chain,'d'): document['d'] = chain.d
if hasattr(chain,'j'): document['j'] = chain.j
if hasattr(chain,'junction_nt'): document['junction_nt'] = chain.junction_nt
if hasattr(chain,'junction_aa'): document['junction_aa'] = chain.junction_aa
if hasattr(chain,'num_mutations'): document['num_mutations'] = chain.num_mutations
return document
def encode_chain(chain):
document = simplifySeqRecord(chain)
if hasattr(chain, 'v'): document['v'] = chain.v
if hasattr(chain, 'd'): document['d'] = chain.d
if hasattr(chain, 'j'): document['j'] = chain.j
if hasattr(chain, 'junction_nt'):
document['junction_nt'] = chain.junction_nt
if hasattr(chain, 'junction_aa'):
document['junction_aa'] = chain.junction_aa
if hasattr(chain, 'num_mutations'):
document['num_mutations'] = chain.num_mutations
return document