def test_01_spreadsheet(self):
s = SpreadsheetJob()
s.filename = "myfile.csv"
s.contact_email = "*****@*****.**"
s.status_code = "processing"
s.status_message = "currently working on it!"
assert s.filename == "myfile.csv"
assert s.contact_email == "*****@*****.**"
assert s.status_code == "processing"
assert s.status_message == "currently working on it!"
def test_04_pc_complete(self):
job = SpreadsheetJob()
job.save()
# a record with no completeness
r = Record()
r.upload_id = job.id
r.save()
# a record with epmc complete
r2 = Record()
r2.upload_id = job.id
r2.epmc_complete = True
r2.save()
# a record with both complete
r3 = Record()
r3.upload_id = job.id
r3.epmc_complete = True
r3.oag_complete = True
r3.save()
time.sleep(1)
comp = job.pc_complete
assert int(comp) == 50
r.epmc_complete = True
r.save()
time.sleep(1)
comp = job.pc_complete
assert int(comp) == 66
r.oag_complete = True
r2.oag_complete = True
r.save()
r2.save()
time.sleep(1)
comp = job.pc_complete
assert int(comp) == 100
def test_04_pc_complete(self):
job = SpreadsheetJob()
job.save()
# a record with no completeness
r = Record()
r.upload_id = job.id
r.save()
# a record with epmc complete
r2 = Record()
r2.upload_id = job.id
r2.epmc_complete = True
r2.save()
# a record with both complete
r3 = Record()
r3.upload_id = job.id
r3.epmc_complete = True
r3.oag_complete = True
r3.save()
time.sleep(1)
comp = job.pc_complete
assert int(comp) == 50
r.epmc_complete = True
r.save()
time.sleep(1)
comp = job.pc_complete
assert int(comp) == 66
r.oag_complete = True
r2.oag_complete = True
r.save()
r2.save()
time.sleep(1)
comp = job.pc_complete
assert int(comp) == 100
def test_01_spreadsheet(self):
s = SpreadsheetJob()
s.filename = "myfile.csv"
s.contact_email = "*****@*****.**"
s.status_code = "processing"
s.status_message = "currently working on it!"
assert s.filename == "myfile.csv"
assert s.contact_email == "*****@*****.**"
assert s.status_code == "processing"
assert s.status_message == "currently working on it!"
def test_06_duplicates(self):
# first make ourselves a job to work on
job = SpreadsheetJob()
job.save()
# now make a bunch of records, some unique and some duplicate
# unique pmcid
r = Record()
r.upload_id = job.id
r.pmcid = "PMCunique"
r.save()
# duplicate pmcid
r = Record()
r.upload_id = job.id
r.pmcid = "PMCdupe"
r.save()
r = Record()
r.upload_id = job.id
r.pmcid = "PMCdupe"
r.save()
# unique pmid
r = Record()
r.upload_id = job.id
r.pmid = "unique"
r.save()
# duplicate pmid
r = Record()
r.upload_id = job.id
r.pmid = "dupe"
r.save()
r = Record()
r.upload_id = job.id
r.pmid = "dupe"
r.save()
# unique doi
r = Record()
r.upload_id = job.id
r.doi = "10.unique"
r.save()
# duplicate pmcid
r = Record()
r.upload_id = job.id
r.doi = "10.dupe"
r.save()
r = Record()
r.upload_id = job.id
r.doi = "10.dupe"
r.save()
# one that is a duplicate of everything
r = Record()
r.upload_id = job.id
r.pmcid = "PMCdupe"
r.pmid = "dupe"
r.doi = "10.dupe"
r.save()
# one that is confused about its duplication
r = Record()
r.upload_id = job.id
r.pmcid = "PMCdupe"
r.pmid = "dupe"
r.doi = "10.notdupe"
r.save()
time.sleep(2)
dupes = job.list_duplicate_identifiers()
# check the structure of the response
assert "pmcid" in dupes
assert "pmid" in dupes
assert "doi" in dupes
# check the contentes
assert len(dupes["pmcid"]) == 1
assert "PMCdupe" in dupes["pmcid"]
assert len(dupes["pmid"]) == 1
assert "dupe" in dupes["pmid"]
assert len(dupes["doi"]) == 1
assert "10.dupe" in dupes["doi"]
def test_06_duplicates(self):
# first make ourselves a job to work on
job = SpreadsheetJob()
job.save()
# now make a bunch of records, some unique and some duplicate
# unique pmcid
r = Record()
r.upload_id = job.id
r.pmcid = "PMCunique"
r.save()
# duplicate pmcid
r = Record()
r.upload_id = job.id
r.pmcid = "PMCdupe"
r.save()
r = Record()
r.upload_id = job.id
r.pmcid = "PMCdupe"
r.save()
# unique pmid
r = Record()
r.upload_id = job.id
r.pmid = "unique"
r.save()
# duplicate pmid
r = Record()
r.upload_id = job.id
r.pmid = "dupe"
r.save()
r = Record()
r.upload_id = job.id
r.pmid = "dupe"
r.save()
# unique doi
r = Record()
r.upload_id = job.id
r.doi = "10.unique"
r.save()
# duplicate pmcid
r = Record()
r.upload_id = job.id
r.doi = "10.dupe"
r.save()
r = Record()
r.upload_id = job.id
r.doi = "10.dupe"
r.save()
# one that is a duplicate of everything
r = Record()
r.upload_id = job.id
r.pmcid = "PMCdupe"
r.pmid = "dupe"
r.doi = "10.dupe"
r.save()
# one that is confused about its duplication
r = Record()
r.upload_id = job.id
r.pmcid = "PMCdupe"
r.pmid = "dupe"
r.doi = "10.notdupe"
r.save()
time.sleep(2)
dupes = job.list_duplicate_identifiers()
# check the structure of the response
assert "pmcid" in dupes
assert "pmid" in dupes
assert "doi" in dupes
# check the contentes
assert len(dupes["pmcid"]) == 1
assert "PMCdupe" in dupes["pmcid"]
assert len(dupes["pmid"]) == 1
assert "dupe" in dupes["pmid"]
assert len(dupes["doi"]) == 1
assert "10.dupe" in dupes["doi"]
