def processAlgorithm(self, progress):
commands = []
commands.append(os.path.join(TauDEMUtils.mpiexecPath(), "mpiexec"))
processNum = SextanteConfig.getSetting(TauDEMUtils.MPI_PROCESSES)
if processNum <= 0:
raise GeoAlgorithmExecutionException("Wrong number of MPI processes used.\nPlease set correct number before running TauDEM algorithms.")
commands.append("-n")
commands.append(str(processNum))
commands.append(os.path.join(TauDEMUtils.taudemPath(), self.cmdName))
commands.append("-plen")
commands.append(self.getParameterValue(self.LENGTH_GRID))
commands.append("-ad8")
commands.append(self.getParameterValue(self.CONTRIB_AREA_GRID))
commands.append("-par")
commands.append(str(self.getParameterValue(self.THRESHOLD)))
commands.append(str(self.getParameterValue(self.EXPONENT)))
commands.append("-ss")
commands.append(self.getOutputValue(self.STREAM_SOURCE_GRID))
loglines = []
loglines.append("TauDEM execution command")
for line in commands:
loglines.append(line)
SextanteLog.addToLog(SextanteLog.LOG_INFO, loglines)
TauDEMUtils.executeTauDEM(commands, progress)
def processAlgorithm(self, progress):
commands = []
commands.append(os.path.join(TauDEMUtils.mpiexecPath(), "mpiexec"))
processNum = SextanteConfig.getSetting(TauDEMUtils.MPI_PROCESSES)
if processNum <= 0:
raise GeoAlgorithmExecutionException("Wrong number of MPI processes used.\nPlease set correct number before running TauDEM algorithms.")
commands.append("-n")
commands.append(str(processNum))
commands.append(os.path.join(TauDEMUtils.taudemPath(), self.cmdName))
commands.append("-plen")
commands.append(self.getParameterValue(self.LENGTH_GRID))
commands.append("-ad8")
commands.append(self.getParameterValue(self.CONTRIB_AREA_GRID))
commands.append("-par")
commands.append(str(self.getParameterValue(self.THRESHOLD)))
commands.append(str(self.getParameterValue(self.EXPONENT)))
commands.append("-ss")
commands.append(self.getOutputValue(self.STREAM_SOURCE_GRID))
loglines = []
loglines.append("TauDEM execution command")
for line in commands:
loglines.append(line)
SextanteLog.addToLog(SextanteLog.LOG_INFO, loglines)
TauDEMUtils.executeTauDEM(commands, progress)
def processAlgorithm(self, progress):
commands = []
commands.append(os.path.join(TauDEMUtils.mpiexecPath(), "mpiexec"))
processNum = SextanteConfig.getSetting(TauDEMUtils.MPI_PROCESSES)
if processNum <= 0:
raise GeoAlgorithmExecutionException("Wrong number of MPI processes used.\nPlease set correct number before running TauDEM algorithms.")
commands.append("-n")
commands.append(str(processNum))
commands.append(os.path.join(TauDEMUtils.taudemPath(), self.cmdName))
commands.append("-ang")
commands.append(self.getParameterValue(self.DINF_FLOW_DIR_GRID))
commands.append("-fel")
commands.append(self.getParameterValue(self.PIT_FILLED_GRID))
commands.append("-m")
commands.append(str(self.STAT_DICT[self.getParameterValue(self.STAT_METHOD)]))
commands.append(str(self.DIST_DICT[self.getParameterValue(self.DIST_METHOD)]))
commands.append("-thresh")
commands.append(str(self.getParameterValue(self.THRESHOLD)))
if str(self.getParameterValue(self.EDGE_CONTAM)).lower() == "false":
commands.append("-nc")
commands.append("-du")
commands.append(self.getOutputValue(self.DIST_UP_GRID))
loglines = []
loglines.append("TauDEM execution command")
for line in commands:
loglines.append(line)
SextanteLog.addToLog(SextanteLog.LOG_INFO, loglines)
TauDEMUtils.executeTauDEM(commands, progress)
def initializeSettings(self):
AlgorithmProvider.initializeSettings(self)
SextanteConfig.addSetting(
Setting(self.getDescription(), TauDEMUtils.TAUDEM_FOLDER,
"TauDEM command line tools folder",
TauDEMUtils.taudemPath()))
SextanteConfig.addSetting(
Setting(self.getDescription(), TauDEMUtils.MPIEXEC_FOLDER,
"MPICH2/OpenMPI bin directory", TauDEMUtils.mpiexecPath()))
SextanteConfig.addSetting(
Setting(self.getDescription(), TauDEMUtils.MPI_PROCESSES,
"Number of MPI parallel processes to use", 2))
def processAlgorithm(self, progress):
commands = []
commands.append(os.path.join(TauDEMUtils.mpiexecPath(), "mpiexec"))
processNum = SextanteConfig.getSetting(TauDEMUtils.MPI_PROCESSES)
if processNum <= 0:
raise GeoAlgorithmExecutionException(
"Wrong number of MPI processes used.\nPlease set correct number before running TauDEM algorithms."
)
commands.append("-n")
commands.append(str(processNum))
commands.append(os.path.join(TauDEMUtils.taudemPath(), self.cmdName))
commands.append("-ang")
commands.append(self.getParameterValue(self.DINF_FLOW_DIR_GRID))
commands.append("-tsup")
commands.append(self.getParameterValue(self.SUPPLY_GRID))
commands.append("-tc")
commands.append(self.getParameterValue(self.CAPACITY_GRID))
commands.append("-cs")
commands.append(self.getParameterValue(self.IN_CONCENTR_GRID))
param = self.getParameterValue(self.OUTLETS_SHAPE)
if param is not None:
commands.append("-o")
commands.append(param)
if str(self.getParameterValue(self.EDGE_CONTAM)).lower() == "false":
commands.append("-nc")
commands.append("-tla")
commands.append(self.getOutputValue(self.TRANSP_LIM_ACCUM_GRID))
commands.append("-tdep")
commands.append(self.getOutputValue(self.DEPOSITION_GRID))
commands.append("-ctpt")
commands.append(self.getOutputValue(self.OUT_CONCENTR_GRID))
loglines = []
loglines.append("TauDEM execution command")
for line in commands:
loglines.append(line)
SextanteLog.addToLog(SextanteLog.LOG_INFO, loglines)
TauDEMUtils.executeTauDEM(commands, progress)
def processAlgorithm(self, progress):
commands = []
commands.append(os.path.join(TauDEMUtils.mpiexecPath(), "mpiexec"))
processNum = SextanteConfig.getSetting(TauDEMUtils.MPI_PROCESSES)
if processNum <= 0:
raise GeoAlgorithmExecutionException(
"Wrong number of MPI processes used.\nPlease set correct number before running TauDEM algorithms."
)
commands.append("-n")
commands.append(str(processNum))
commands.append(os.path.join(TauDEMUtils.taudemPath(), self.cmdName))
commands.append("-ang")
commands.append(self.getParameterValue(self.DINF_FLOW_DIR_GRID))
commands.append("-fel")
commands.append(self.getParameterValue(self.PIT_FILLED_GRID))
commands.append("-src")
commands.append(self.getParameterValue(self.STREAM_GRID))
wg = self.getParameterValue(self.WEIGHT_PATH_GRID)
if wg is not None:
commands.append("-wg")
commands.append(self.getParameterValue(self.WEIGHT_PATH_GRID))
commands.append("-m")
commands.append(
str(self.STAT_DICT[self.getParameterValue(self.STAT_METHOD)]))
commands.append(
str(self.DIST_DICT[self.getParameterValue(self.DIST_METHOD)]))
if str(self.getParameterValue(self.EDGE_CONTAM)).lower() == "false":
commands.append("-nc")
commands.append("-dd")
commands.append(self.getOutputValue(self.DIST_DOWN_GRID))
loglines = []
loglines.append("TauDEM execution command")
for line in commands:
loglines.append(line)
SextanteLog.addToLog(SextanteLog.LOG_INFO, loglines)
TauDEMUtils.executeTauDEM(commands, progress)
def processAlgorithm(self, progress):
commands = []
commands.append(os.path.join(TauDEMUtils.mpiexecPath(), "mpiexec"))
processNum = SextanteConfig.getSetting(TauDEMUtils.MPI_PROCESSES)
if processNum <= 0:
raise GeoAlgorithmExecutionException(
"Wrong number of MPI processes used.\nPlease set correct number before running TauDEM algorithms."
)
commands.append("-n")
commands.append(str(processNum))
commands.append(os.path.join(TauDEMUtils.taudemPath(), self.cmdName))
for param in self.parameters:
if param.value == None or param.value == "":
continue
if isinstance(param, ParameterNumber):
commands.append(param.name)
commands.append(str(param.value))
if isinstance(param, (ParameterRaster, ParameterVector)):
commands.append(param.name)
commands.append(param.value)
elif isinstance(param, ParameterBoolean):
if param.value and str(param.value).lower() == "false":
commands.append(param.name)
elif isinstance(param, ParameterString):
commands.append(param.name)
commands.append(str(param.value))
for out in self.outputs:
commands.append(out.name)
commands.append(out.value)
loglines = []
loglines.append("TauDEM execution command")
for line in commands:
loglines.append(line)
SextanteLog.addToLog(SextanteLog.LOG_INFO, loglines)
TauDEMUtils.executeTauDEM(commands, progress)
def processAlgorithm(self, progress):
commands = []
commands.append(os.path.join(TauDEMUtils.mpiexecPath(), "mpiexec"))
processNum = SextanteConfig.getSetting(TauDEMUtils.MPI_PROCESSES)
if processNum <= 0:
raise GeoAlgorithmExecutionException(
"Wrong number of MPI processes used.\nPlease set correct number before running TauDEM algorithms."
)
commands.append("-n")
commands.append(str(processNum))
commands.append(os.path.join(TauDEMUtils.taudemPath(), self.cmdName))
commands.append("-p")
commands.append(self.getParameterValue(self.D8_FLOW_DIR_GRID))
param = self.getParameterValue(self.OUTLETS_SHAPE)
if param is not None:
commands.append("-o")
commands.append(param)
param = self.getParameterValue(self.MASK_GRID)
if param is not None:
commands.append("-mask")
commands.append(param)
commands.append("-thresh")
commands.append(self.getParameterValue(self.THRESHOLD))
commands.append("-plen")
commands.append(self.getOutputValue(self.LONGEST_LEN_GRID))
commands.append("-tlen")
commands.append(self.getOutputValue(self.TOTAL_LEN_GRID))
commands.append("-gord")
commands.append(self.getOutputValue(self.STRAHLER_GRID))
loglines = []
loglines.append("TauDEM execution command")
for line in commands:
loglines.append(line)
SextanteLog.addToLog(SextanteLog.LOG_INFO, loglines)
TauDEMUtils.executeTauDEM(commands, progress)
def processAlgorithm(self, progress):
commands = []
commands.append(os.path.join(TauDEMUtils.mpiexecPath(), "mpiexec"))
processNum = SextanteConfig.getSetting(TauDEMUtils.MPI_PROCESSES)
if processNum <= 0:
raise GeoAlgorithmExecutionException(
"Wrong number of MPI processes used.\nPlease set correct number before running TauDEM algorithms."
)
commands.append("-n")
commands.append(str(processNum))
commands.append(os.path.join(TauDEMUtils.taudemPath(), self.cmdName))
for param in self.parameters:
if param.value == None or param.value == "":
continue
if isinstance(param, ParameterNumber):
commands.append(param.name)
commands.append(str(param.value))
if isinstance(param, (ParameterRaster, ParameterVector)):
commands.append(param.name)
commands.append(param.value)
elif isinstance(param, ParameterBoolean):
if param.value and str(param.value).lower() == "false":
commands.append(param.name)
elif isinstance(param, ParameterString):
commands.append(param.name)
commands.append(str(param.value))
for out in self.outputs:
commands.append(out.name)
commands.append(out.value)
loglines = []
loglines.append("TauDEM execution command")
for line in commands:
loglines.append(line)
SextanteLog.addToLog(SextanteLog.LOG_INFO, loglines)
TauDEMUtils.executeTauDEM(commands, progress)
def processAlgorithm(self, progress):
commands = []
commands.append(os.path.join(TauDEMUtils.mpiexecPath(), "mpiexec"))
processNum = SextanteConfig.getSetting(TauDEMUtils.MPI_PROCESSES)
if processNum <= 0:
raise GeoAlgorithmExecutionException("Wrong number of MPI processes used.\nPlease set correct number before running TauDEM algorithms.")
commands.append("-n")
commands.append(str(processNum))
commands.append(os.path.join(TauDEMUtils.taudemPath(), self.cmdName))
commands.append("-ang")
commands.append(self.getParameterValue(self.DINF_FLOW_DIR_GRID))
commands.append("-tsup")
commands.append(self.getParameterValue(self.SUPPLY_GRID))
commands.append("-tc")
commands.append(self.getParameterValue(self.CAPACITY_GRID))
commands.append("-cs")
commands.append(self.getParameterValue(self.IN_CONCENTR_GRID))
param = self.getParameterValue(self.OUTLETS_SHAPE)
if param is not None:
commands.append("-o")
commands.append(param)
if str(self.getParameterValue(self.EDGE_CONTAM)).lower() == "false":
commands.append("-nc")
commands.append("-tla")
commands.append(self.getOutputValue(self.TRANSP_LIM_ACCUM_GRID))
commands.append("-tdep")
commands.append(self.getOutputValue(self.DEPOSITION_GRID))
commands.append("-ctpt")
commands.append(self.getOutputValue(self.OUT_CONCENTR_GRID))
loglines = []
loglines.append("TauDEM execution command")
for line in commands:
loglines.append(line)
SextanteLog.addToLog(SextanteLog.LOG_INFO, loglines)
TauDEMUtils.executeTauDEM(commands, progress)
def createAlgsList(self):
self.preloadedAlgs = []
folder = TauDEMUtils.taudemDescriptionPath()
for descriptionFile in os.listdir(folder):
if descriptionFile.endswith("txt"):
try:
alg = TauDEMAlgorithm(os.path.join(folder, descriptionFile))
if alg.name.strip() != "":
self.preloadedAlgs.append(alg)
else:
SextanteLog.addToLog(SextanteLog.LOG_ERROR, "Could not open TauDEM algorithm: " + descriptionFile)
except Exception, e:
SextanteLog.addToLog(SextanteLog.LOG_ERROR, "Could not open TauDEM algorithm: " + descriptionFile)
def processAlgorithm(self, progress):
commands = []
commands.append(os.path.join(TauDEMUtils.mpiexecPath(), "mpiexec"))
processNum = SextanteConfig.getSetting(TauDEMUtils.MPI_PROCESSES)
if processNum <= 0:
raise GeoAlgorithmExecutionException("Wrong number of MPI processes used.\nPlease set correct number before running TauDEM algorithms.")
commands.append("-n")
commands.append(str(processNum))
commands.append(os.path.join(TauDEMUtils.taudemPath(), self.cmdName))
commands.append("-p")
commands.append(self.getParameterValue(self.D8_FLOW_DIR_GRID))
param = self.getParameterValue(self.OUTLETS_SHAPE)
if param is not None:
commands.append("-o")
commands.append(param)
param = self.getParameterValue(self.MASK_GRID)
if param is not None:
commands.append("-mask")
commands.append(param)
commands.append("-thresh")
commands.append(self.getParameterValue(self.THRESHOLD))
commands.append("-plen")
commands.append(self.getOutputValue(self.LONGEST_LEN_GRID))
commands.append("-tlen")
commands.append(self.getOutputValue(self.TOTAL_LEN_GRID))
commands.append("-gord")
commands.append(self.getOutputValue(self.STRAHLER_GRID))
loglines = []
loglines.append("TauDEM execution command")
for line in commands:
loglines.append(line)
SextanteLog.addToLog(SextanteLog.LOG_INFO, loglines)
TauDEMUtils.executeTauDEM(commands, progress)
def processAlgorithm(self, progress):
commands.append(os.path.join(TauDEMUtils.mpiexecPath(), "mpiexec"))
processNum = SextanteConfig.getSetting(TauDEMUtils.MPI_PROCESSES)
if processNum <= 0:
raise GeoAlgorithmExecutionException(
"Wrong number of MPI processes used.\nPlease set correct number before running TauDEM algorithms."
)
commands.append("-n")
commands.append(str(processNum))
commands.append(os.path.join(TauDEMUtils.taudemPath(), self.cmdName))
commands.append("-ad8")
commands.append(self.getParameterValue(self.D8_CONTRIB_AREA_GRID))
commands.append("-p")
commands.append(self.getParameterValue(self.D8_FLOW_DIR_GRID))
commands.append("-fel")
commands.append(self.getParameterValue(self.PIT_FILLED_GRID))
commands.append("-ssa")
commands.append(self.getParameterValue(self.ACCUM_STREAM_SOURCE_GRID))
commands.append("-o")
commands.append(self.getParameterValue(self.OUTLETS_SHAPE))
commands.append("-par")
commands.append(str(self.getParameterValue(self.MIN_TRESHOLD)))
commands.append(str(self.getParameterValue(self.MAX_THRESHOLD)))
commands.append(str(self.getParameterValue(self.TRESHOLD_NUM)))
commands.append(str(self.getParameterValue(self.STEPS)))
commands.append("-drp")
commands.append(self.getOutputValue(self.DROP_ANALYSIS_FILE))
loglines = []
loglines.append("TauDEM execution command")
for line in commands:
loglines.append(line)
SextanteLog.addToLog(SextanteLog.LOG_INFO, loglines)
TauDEMUtils.executeTauDEM(commands, progress)
def processAlgorithm(self, progress):
commands = []
commands.append(os.path.join(TauDEMUtils.mpiexecPath(), "mpiexec"))
processNum = SextanteConfig.getSetting(TauDEMUtils.MPI_PROCESSES)
if processNum <= 0:
raise GeoAlgorithmExecutionException("Wrong number of MPI processes used.\nPlease set correct number before running TauDEM algorithms.")
commands.append("-n")
commands.append(str(processNum))
commands.append(os.path.join(TauDEMUtils.taudemPath(), self.cmdName))
commands.append("-ad8")
commands.append(self.getParameterValue(self.D8_CONTRIB_AREA_GRID))
commands.append("-p")
commands.append(self.getParameterValue(self.D8_FLOW_DIR_GRID))
commands.append("-fel")
commands.append(self.getParameterValue(self.PIT_FILLED_GRID))
commands.append("-ssa")
commands.append(self.getParameterValue(self.ACCUM_STREAM_SOURCE_GRID))
commands.append("-o")
commands.append(self.getParameterValue(self.OUTLETS_SHAPE))
commands.append("-par")
commands.append(str(self.getParameterValue(self.MIN_TRESHOLD)))
commands.append(str(self.getParameterValue(self.MAX_THRESHOLD)))
commands.append(str(self.getParameterValue(self.TRESHOLD_NUM)))
commands.append(str(self.getParameterValue(self.STEPS)))
commands.append("-drp")
commands.append(self.getOutputValue(self.DROP_ANALYSIS_FILE))
loglines = []
loglines.append("TauDEM execution command")
for line in commands:
loglines.append(line)
SextanteLog.addToLog(SextanteLog.LOG_INFO, loglines)
TauDEMUtils.executeTauDEM(commands, progress)
def createAlgsList(self):
self.preloadedAlgs = []
folder = TauDEMUtils.taudemDescriptionPath()
for descriptionFile in os.listdir(folder):
if descriptionFile.endswith("txt"):
try:
alg = TauDEMAlgorithm(os.path.join(folder,
descriptionFile))
if alg.name.strip() != "":
self.preloadedAlgs.append(alg)
else:
SextanteLog.addToLog(
SextanteLog.LOG_ERROR,
"Could not open TauDEM algorithm: " +
descriptionFile)
except Exception, e:
SextanteLog.addToLog(
SextanteLog.LOG_ERROR,
"Could not open TauDEM algorithm: " + descriptionFile)
def initializeSettings(self):
AlgorithmProvider.initializeSettings(self)
SextanteConfig.addSetting(Setting(self.getDescription(), TauDEMUtils.TAUDEM_FOLDER, "TauDEM command line tools folder", TauDEMUtils.taudemPath()))
SextanteConfig.addSetting(Setting(self.getDescription(), TauDEMUtils.MPIEXEC_FOLDER, "MPICH2/OpenMPI bin directory", TauDEMUtils.mpiexecPath()))
SextanteConfig.addSetting(Setting(self.getDescription(), TauDEMUtils.MPI_PROCESSES, "Number of MPI parallel processes to use", 2))