def test_raise_on_both_path_types():
with pytest.raises(
ValueError,
match=
"Either `path` or all 3 of `{bed,bim,fam}_path` must be specified but not both",
):
read_plink(path="x", bed_path="x")
def test_read_multi_path(shared_datadir, ds1):
path = shared_datadir / example_dataset_1
ds2 = read_plink(
bed_path=path.with_suffix(".bed"),
bim_path=path.with_suffix(".bim"),
fam_path=path.with_suffix(".fam"),
bim_sep="\t",
fam_sep="\t",
)
xr.testing.assert_equal(ds1, ds2)
def ds1(shared_datadir, request):
path = shared_datadir / example_dataset_1
return read_plink(path=path, bim_sep="\t", fam_sep="\t", **request.param)