def list_jobs(self, mask=["all"]):
result = dict()
stderr = StringIO()
if "*" in mask or "all" in mask:
output = bjobs("-a", _err=stderr)
else:
output = bjobs(_err=stderr)
error_message = stderr.getvalue().strip()
logger.debug(error_message)
if re.search(r"No (?:\w* )job found", error_message):
return result
# Parse job info, pack it into dictionary
job_lines = output.split("\n")[1:] # skip column headers
for job_line in job_lines:
job_line = job_line.strip()
if not job_line:
continue
match = job_expr.search(job_line)
if not match:
logger.warn("Failed to parse job line: %s" % job_line)
continue
lsf_info = dict()
lsf_info["lsf_id"] = match.group(1)
lsf_info["lsf_user"] = match.group(2)
lsf_info["lsf_status"] = match.group(3)
lsf_info["lsf_queue"] = match.group(4)
lsf_info["lsf_from_host"] = match.group(5)
lsf_info["lsf_exec_host"] = match.group(6)
lsf_info["lsf_job_name"] = match.group(7)
lsf_info["lsf_submitted_time"] = match.group(8)
result[lsf_info["lsf_id"]] = lsf_info
return result
def get_lsf_running_jobs(self, depth=0):
"""Query LSF for status of all jobs. Returns Set of job IDs"""
try:
status_str = bjobs().stdout
except ErrorReturnCode, e:
if depth < 4:
logger.warn("bjobs failed with message {0}".format(str(e)))
return self.get_lsf_running_jobs(depth+1)
else:
raise