def app_register_blueprints(app):
# TODO: (jsm) deprecate the index endpoints on the root path,
# these are currently duplicated under /index (the ultimate
# path) for migration
app.url_map.strict_slashes = False
if "DICTIONARY_URL" in app.config:
url = app.config["DICTIONARY_URL"]
datadictionary = DataDictionary(url=url)
elif "PATH_TO_SCHEMA_DIR" in app.config:
datadictionary = DataDictionary(
root_dir=app.config["PATH_TO_SCHEMA_DIR"])
else:
import gdcdictionary
datadictionary = gdcdictionary.gdcdictionary
dictionary.init(datadictionary)
from gdcdatamodel import models as md
from gdcdatamodel import validators as vd
models.init(md)
validators.init(vd)
sheepdog_blueprint = sheepdog.create_blueprint("submission")
v0 = "/v0"
app.register_blueprint(sheepdog_blueprint, url_prefix=v0 + "/submission")
app.register_blueprint(sheepdog_blueprint, url_prefix="/submission")
app.register_blueprint(oauth2_blueprint.blueprint,
url_prefix=v0 + "/oauth2")
app.register_blueprint(oauth2_blueprint.blueprint, url_prefix="/oauth2")
def dictionary_setup(_app):
url = 's3://testurl'
session = requests.Session()
adapter = requests_mock.Adapter()
session.mount('s3', adapter)
json_dict = json.load(open(PATH_TO_SCHEMA_DIR + '/dictionary.json'))
adapter.register_uri('GET', url, json=json_dict, status_code=200)
resp = session.get(url)
with patch('requests.get') as get_mocked:
get_mocked.return_value = resp
datadictionary = DataDictionary(url=url)
dictionary.init(datadictionary)
from gdcdatamodel import models as md
from gdcdatamodel import validators as vd
models.init(md)
validators.init(vd)
sheepdog_blueprint = sheepdog.create_blueprint(
'submission'
)
try:
_app.register_blueprint(sheepdog_blueprint, url_prefix='/v0/submission')
except AssertionError:
_app.logger.info('Blueprint is already registered!!!')
def app_init(app):
# Register duplicates only at runtime
app.logger.info("Initializing app")
app.config["REQUIRE_FILE_INDEX_EXISTS"] = (
# If True, enforce indexd record exists before file node registration
app.config.get("REQUIRE_FILE_INDEX_EXISTS", False))
app_register_blueprints(app)
db_init(app)
# exclude es init as it's not used yet
# es_init(app)
try:
app.secret_key = app.config["FLASK_SECRET_KEY"]
except KeyError:
app.logger.error(
"Secret key not set in config! Authentication will not work")
sheepdog_blueprint = sheepdog.create_blueprint("submission")
try:
app.register_blueprint(sheepdog_blueprint, url_prefix="/v0/submission")
except AssertionError:
app.logger.info("Blueprint is already registered!!!")
app.node_authz_entity_name = os.environ.get("AUTHZ_ENTITY_NAME", None)
app.node_authz_entity = None
app.subject_entity = None
if app.node_authz_entity_name:
full_module_name = "datamodelutils.models"
mymodule = importlib.import_module(full_module_name)
for i in dir(mymodule):
app.logger.warn(i)
if i.lower() == "person":
attribute = getattr(mymodule, i)
app.subject_entity = attribute
if i.lower() == app.node_authz_entity_name.lower():
attribute = getattr(mymodule, i)
app.node_authz_entity = attribute
def app_init(app):
# Register duplicates only at runtime
app.logger.info("Initializing app")
app.config["REQUIRE_FILE_INDEX_EXISTS"] = (
# If True, enforce indexd record exists before file node registration
app.config.get("REQUIRE_FILE_INDEX_EXISTS", False))
app_register_blueprints(app)
db_init(app)
# exclude es init as it's not used yet
# es_init(app)
try:
app.secret_key = app.config["FLASK_SECRET_KEY"]
except KeyError:
app.logger.error(
"Secret key not set in config! Authentication will not work")
sheepdog_blueprint = sheepdog.create_blueprint("submission")
try:
app.register_blueprint(sheepdog_blueprint, url_prefix="/v0/submission")
except AssertionError:
app.logger.info("Blueprint is already registered!!!")
