def __init__(self, patient_name=None, reward_fun=None):
'''
patient_name must be 'adolescent#001' to 'adolescent#010',
or 'adult#001' to 'adult#010', or 'child#001' to 'child#010'
'''
seeds = self._seed()
# have to hard code the patient_name, gym has some interesting
# error when choosing the patient
if patient_name is None:
patient_name = 'adolescent#001'
patient = T1DPatient.withName(patient_name)
sensor = CGMSensor.withName('Dexcom', seed=seeds[1])
hour = self.np_random.randint(low=0.0, high=24.0)
start_time = datetime(2018, 1, 1, hour, 0, 0)
# scenario = RandomScenario(start_time=start_time, seed=seeds[2])
# Added a custom scenario with no meals
# scen = [(7, 45), (12, 70), (16, 15), (18, 80), (23, 10)]
scen = [(0, 0)]
scenario = CustomScenario(start_time=start_time, scenario=scen)
pump = InsulinPump.withName('Insulet')
self.env = _T1DSimEnv(patient, sensor, pump, scenario)
self.reward_fun = reward_fun
# Added by Jonas -- state space is now 10 * sample_time = 30 minutes long
self.state_space_length = 10
self.insulin_history = np.zeros(4)
def __init__(self,
patient_name=None,
custom_scenario=None,
reward_fun=None,
animate=False,
controller_name='',
results_path=None):
'''
patient_name must be 'adolescent#001' to 'adolescent#010',
or 'adult#001' to 'adult#010', or 'child#001' to 'child#010'
'''
seeds = self._seed()
# have to hard code the patient_name, gym has some interesting
# error when choosing the patient
if patient_name is None:
patient_name = 'adolescent#001'
patient = T1DPatient.withName(patient_name)
sensor = CGMSensor.withName('Dexcom', seed=seeds[1])
hour = self.np_random.randint(low=0.0, high=24.0)
start_time = datetime(2018, 1, 1, hour, 0, 0)
if custom_scenario is None:
scenario = RandomScenario(start_time=start_time, seed=seeds[2])
scenario = custom_scenario
pump = InsulinPump.withName('Insulet')
self.env = _T1DSimEnv(patient,
sensor,
pump,
scenario,
controller_name=controller_name,
results_path=results_path)
self.reward_fun = reward_fun
self.animate = animate
def _create_env_from_random_state(self):
# Derive a random seed. This gets passed as a uint, but gets
# checked as an int elsewhere, so we need to keep it below
# 2**31.
seed2 = seeding.hash_seed(self.np_random.randint(0, 1000)) % 2**31
seed3 = seeding.hash_seed(seed2 + 1) % 2**31
seed4 = seeding.hash_seed(seed3 + 1) % 2**31
hour = self.np_random.randint(low=0.0, high=24.0)
if self.saved_state is not None:
seed2=self.saved_state[0]
seed3=self.saved_state[1]
seed4=self.saved_state[2]
hour=self.saved_state[3]
print('Using state', seed2, seed3, seed4, hour)
start_time = datetime(2021, 1, 1, hour, 0, 0)
patient = T1DPatient.withName(self.patient_name, random_init_bg=True, seed=seed4)
sensor = CGMSensor.withName(self.SENSOR_HARDWARE, seed=seed2)
if self.harrison_benedict:
vpatient_params = pd.read_csv(PATIENT_PARA_FILE)
self.kind = self.patient_name.split('#')[0]
self.bw = vpatient_params.query('Name=="{}"'.format(self.patient_name))['BW'].item()
scenario=RandomBalancedScenario(start_time=start_time, seed=seed3, harrison_benedict=self.harrison_benedict, bw=self.bw, kind=self.kind)
else:
scenario = RandomScenario(start_time=start_time, seed=seed3)
pump = InsulinPump.withName(self.INSULIN_PUMP_HARDWARE)
env = _T1DSimEnv(patient, sensor, pump, scenario,noise=self.noise)
return env, seed2, seed3, seed4, hour
def _create_env_from_random_state(self):
# Derive a random seed. This gets passed as a uint, but gets
# checked as an int elsewhere, so we need to keep it below
# 2**31.
seed2 = seeding.hash_seed(self.np_random.randint(0, 1000)) % 2**31
seed3 = seeding.hash_seed(seed2 + 1) % 2**31
seed4 = seeding.hash_seed(seed3 + 1) % 2**31
hour = self.np_random.randint(low=0.0, high=24.0)
start_time = datetime(2018, 1, 1, hour, 0, 0)
patient = T1DPatient.withName(self.patient_name, random_init_bg=True, seed=seed4)
sensor = CGMSensor.withName(self.SENSOR_HARDWARE, seed=seed2)
scenario = RandomScenario(start_time=start_time, seed=seed3)
pump = InsulinPump.withName(self.INSULIN_PUMP_HARDWARE)
env = _T1DSimEnv(patient, sensor, pump, scenario)
return env, seed2, seed3, seed4
def seed(self, seed=None):
print('_seed called')
self.np_random, seed1 = seeding.np_random(seed=seed)
# Derive a random seed. This gets passed as a uint, but gets
# checked as an int elsewhere, so we need to keep it below
# 2**31.
seed2 = seeding.hash_seed(seed1 + 1) % 2**31
seed3 = seeding.hash_seed(seed2 + 1) % 2**31
hour = self.np_random.randint(low=0.0, high=24.0)
start_time = datetime(2021, 1, 1, hour, 0, 0)
patient = T1DPatient.withName(self.patient_name)
sensor = CGMSensor.withName(self.SENSOR_HARDWARE, seed=seed2)
scenario = RandomScenario(start_time=start_time, seed=seed3)
pump = InsulinPump.withName(self.INSULIN_PUMP_HARDWARE)
self.env = _T1DSimEnv(patient, sensor, pump, scenario)
return [seed1, seed2, seed3]
def __init__(self, patient_name=None, reward_fun=None):
'''
patient_name must be 'adolescent#001' to 'adolescent#010',
or 'adult#001' to 'adult#010', or 'child#001' to 'child#010'
'''
seeds = [0, 0, 0, 0, 0] #self._seed()
# have to hard code the patient_name, gym has some interesting
# error when choosing the patient
if patient_name is None:
patient_name = 'adolescent#001'
print(patient_name)
patient = T1DPatient.withName(patient_name)
sensor = CGMSensor.withName('Dexcom', seed=seeds[1])
# sensor = CGMSensor.withName('Navigator', seed=seeds[1])
# sensor = CGMSensor.withName('GuardianRT', seed=seeds[1])
hour = 0 #self.np_random.randint(low=0.0, high=24.0)
start_time = datetime(2018, 1, 1, hour, 0, 0)
scenario = RandomScenario(start_time=start_time, seed=seeds[2])
pump = InsulinPump.withName('Insulet')
self.env = _T1DSimEnv(patient, sensor, pump, scenario)
self.reward_fun = reward_fun
def __init__(self,
patient_name=None,
reward_fun=None,
scen=None,
start_time=None,
sensor_name=None,
pump_name=None): #, scenario_tup=None, startTime=None
'''
patient_name must be 'adolescent#001' to 'adolescent#010',
or 'adult#001' to 'adult#010', or 'child#001' to 'child#010'
'''
seeds = self._seed()
# have to hard code the patient_name, gym has some interesting
# error when choosing the patient
if patient_name is None:
patient_name = 'adolescent#001'
if sensor_name is None:
sensor_name = 'Dexcom'
if pump_name is None:
pump_name = 'Insulet'
print(patient_name)
print(sensor_name)
print(pump_name)
print(scen)
patient = T1DPatient.withName(patient_name)
sensor = CGMSensor.withName(sensor_name, seed=seeds[1])
#hour = self.np_random.randint(low=0.0, high=24.0)
#start_time = datetime(2018, 1, 1, hour, 0, 0)
scenario = CustomScenario(
start_time=start_time, scenario=scen
) #RandomScenario(start_time=start_time, seed=seeds[2])
pump = InsulinPump.withName(pump_name)
self.env = _T1DSimEnv(patient, sensor, pump, scenario)
self.reward_fun = reward_fun
def __init__(self, patient_name=None, reward_fun=None, Initial_Bg=0):
'''
patient_name must be 'adolescent#001' to 'adolescent#010',
or 'adult#001' to 'adult#010', or 'child#001' to 'child#010'
'''
seeds = self._seed()
# have to hard code the patient_name, gym has some interesting
# error when choosing the patient
if patient_name is None:
patient_name = 'adolescent#001'
patient = T1DPatient.withName(patient_name, Initial_Bg)
sensor = CGMSensor.withName('GuardianRT', seed=seeds[1]) #Dexcom
hour = 20 #self.np_random.randint(low=0.0, high=24.0)
start_time = datetime(2018, 1, 1, hour, 0, 0)
# scenario = RandomScenario(start_time=start_time, seed=seeds[2])
# custom scenario is a list of tuples (time, meal_size)
# scen = [(0,float(Initial_Bg)),(13, 45), (16, 10), (18, 35), (22, 10)]#, (23, 10)]
scen = [(13, 45), (16, 10), (18, 35), (22, 10)] #, (23, 10)]
scenario = CustomScenario(start_time=start_time, scenario=scen)
pump = InsulinPump.withName('Insulet')
self.env = _T1DSimEnv(patient, sensor, pump, scenario)
self.reward_fun = reward_fun