Python parse_counts_table Examples

Example #1

File: count_table_csv_parser.py Project: kaladharprajapati/singlet

#!/usr/bin/env python
# vim: fdm=indent
'''
author:     Fabio Zanini
date:       07/08/17
content:    Test CSV/TSV parser for sample sheets.
'''
# Script
if __name__ == '__main__':

    # NOTE: an env variable for the config file needs to be set when
    # calling this script
    print('Parsing example TSV count table')
    from singlet.io import parse_counts_table
    table = parse_counts_table('example_table_tsv')
    print('Done!')

    print('Parsing example TSV count table (split)')
    from singlet.io import parse_counts_table
    table = parse_counts_table('example_table_tsv_split')
    print('Done!')

Example #2

def test_parse_counts_table():
    print('Parsing example TSV count table from dataset')
    from singlet.io import parse_counts_table
    table = parse_counts_table({'datasetname': 'example_dataset'})
    print('Done!')

Example #3

def test_parse_pickle():
    print('Parsing example TSV count table')
    from singlet.io import parse_counts_table
    table = parse_counts_table({'countsname': 'example_table_pickle'})
    print('Done!')

Example #4

File: test_count_table_csv_parser.py Project: entcai/singlet

def test_parse_tsv_split():
    print('Parsing example TSV count table (split)')
    from singlet.io import parse_counts_table
    table = parse_counts_table({'countsname': 'example_table_tsv_split'})
    print('Done!')