Python Sequence.concat Examples

Example #1

File: _tabular_msa.py Project: jdrudolph/scikit-bio

 def _get_position(self, i):
     seq = Sequence.concat([s[i] for s in self._seqs], how='outer')
     # TODO: when positional metadata exists, do something like below:
     # if self.has_positional_metadata():
     #     seq.metadata = dict(self.positional_metadata.iloc[i])
     return seq

Example #2

File: _tabular_msa.py Project: corburn/scikit-bio

 def _get_position(self, i):
     seq = Sequence.concat([s[i] for s in self._seqs], how='outer')
     # TODO: when positional metadata exists, do something like below:
     # if self.has_positional_metadata():
     #     seq.metadata = dict(self.positional_metadata.iloc[i])
     return seq

Example #3

File: _tabular_msa.py Project: terrycojones/scikit-bio

 def _get_position(self, i):
     seq = Sequence.concat([s[i] for s in self._seqs], how='outer')
     if self.has_positional_metadata():
         seq.metadata = dict(self.positional_metadata.iloc[i])
     return seq

Example #4

File: _tabular_msa.py Project: liupfskygre/scikit-bio

 def _get_position(self, i):
     seq = Sequence.concat([s[i] for s in self._seqs], how='outer')
     if self.has_positional_metadata():
         seq.metadata = dict(self.positional_metadata.iloc[i])
     return seq