def write_text(outfname, text, *more_texts):
"""Write one or more strings (blocks of text) to a file."""
with tabio.safe_write(outfname or sys.stdout) as handle:
handle.write(text)
if more_texts:
for mtext in more_texts:
handle.write(mtext)
def write_tsv(outfname, rows, colnames=None):
"""Write rows, with optional column header, to tabular file."""
with tabio.safe_write(outfname or sys.stdout) as handle:
if colnames:
header = '\t'.join(colnames) + '\n'
handle.write(header)
handle.writelines('\t'.join(map(str, row)) + '\n' for row in rows)
def write_text(outfname, text, *more_texts):
"""Write one or more strings (blocks of text) to a file."""
with tabio.safe_write(outfname or sys.stdout) as handle:
handle.write(text)
if more_texts:
for mtext in more_texts:
handle.write(mtext)
def write_dataframe(outfname, dframe, header=True):
"""Write a pandas.DataFrame to a tabular file."""
with tabio.safe_write(outfname or sys.stdout) as handle:
dframe.to_csv(handle,
header=header,
index=False,
sep='\t',
float_format='%.6g')
def write_tsv(outfname, rows, colnames=None):
"""Write rows, with optional column header, to tabular file."""
with tabio.safe_write(outfname or sys.stdout) as handle:
if colnames:
header = '\t'.join(colnames) + '\n'
handle.write(header)
handle.writelines('\t'.join(map(str, row)) + '\n'
for row in rows)
def write_dataframe(outfname, dframe, header=True):
"""Write a pandas.DataFrame to a tabular file."""
with tabio.safe_write(outfname or sys.stdout) as handle:
dframe.to_csv(handle, header=header,
index=False, sep='\t', float_format='%.6g')