def test_ssim_multichannel():
N = 100
X = (np.random.rand(N, N) * 255).astype(np.uint8)
Y = (np.random.rand(N, N) * 255).astype(np.uint8)
S1 = ssim(X, Y, win_size=3)
# replicate across three channels. should get identical value
Xc = np.tile(X[..., np.newaxis], (1, 1, 3))
Yc = np.tile(Y[..., np.newaxis], (1, 1, 3))
S2 = ssim(Xc, Yc, multichannel=True, win_size=3)
assert_almost_equal(S1, S2)
# full case should return an image as well
m, S3 = ssim(Xc, Yc, multichannel=True, full=True)
assert_equal(S3.shape, Xc.shape)
# gradient case
m, grad = ssim(Xc, Yc, multichannel=True, gradient=True)
assert_equal(grad.shape, Xc.shape)
# full and gradient case
m, grad, S3 = ssim(Xc, Yc, multichannel=True, full=True, gradient=True)
assert_equal(grad.shape, Xc.shape)
assert_equal(S3.shape, Xc.shape)
# fail if win_size exceeds any non-channel dimension
assert_raises(ValueError, ssim, Xc, Yc, win_size=7, multichannel=False)
def test_ssim_patch_range():
N = 51
X = (np.random.rand(N, N) * 255).astype(np.uint8)
Y = (np.random.rand(N, N) * 255).astype(np.uint8)
assert(ssim(X, Y, win_size=N) < 0.1)
assert_equal(ssim(X, X, win_size=N), 1)
def get_distance_matrix(img_dir):
f_list, IS_IMG = get_f_list(img_dir)
os.chdir(img_dir)
N = len(f_list)
dm = np.ones((N, N))
if IS_IMG:
# distance matrix, n by n init to zeros
for i_tuple in itertools.combinations(range(len(f_list)), 2):
i, j = i_tuple
img1 = cv2.imread(f_list[i])
img2 = cv2.imread(f_list[j])
# to grey scale
img1 = cv2.cvtColor(img1, cv2.COLOR_BGR2GRAY)
img2 = cv2.cvtColor(img2, cv2.COLOR_BGR2GRAY)
s = 1 - ssim(img1, img2) # so that distance makes sense
# symmetric matrix!
# not sparse anymore!!!!
dm[i][j] = s
dm[j][i] = s
else:
for i_tuple in itertools.combinations(range(len(f_list)), 2):
i, j = i_tuple
i_dat = get_csv_array(f_list[i])
j_dat = get_csv_array(f_list[j])
s = 1-ssim(i_dat, j_dat)
dm[i][j] = s
dm[j][i] = s
return dm
def svd_compress_ssim(img, target_ss): """Compress image by finding k that is closest to target ssim. Since rank and ssim relationship is linear, we do a binary search, followed by finer grained linear search""" rank = min(img.shape[0], img.shape[1]) left = 1 right = rank last_ss = 100 k = 1 compressed = None U, singular_vals, V = linalg.svd(img) # binary search while left < right: k = (left + right) / 2 S_p = np.zeros((k, k), img.dtype) for i in range(k): S_p[i][i] = singular_vals[i] compressed = combine(U[:,:k], S_p, V[:k,:]) ss = ssim(img, compressed, dynamic_range=compressed.max()-compressed.min()) if abs(ss - target_ss) < abs(last_ss - target_ss): last_ss = ss if ss > target_ss: right = k else: left = k else: break # more fine grained linear search if last_ss < target_ss: while 1: S_p = np.zeros((k + 1, k + 1), img.dtype) for i in range(k + 1): S_p[i][i] = singular_vals[i] compressed = combine(U[:,:k+1], S_p, V[:k+1,:]) ss = ssim(img, compressed, dynamic_range=compressed.max()-compressed.min()) if abs(ss - target_ss) < abs(last_ss - target_ss): last_ss = ss k += 1 else: break else: while 1: S_p = np.zeros((k - 1, k - 1), img.dtype) for i in range(k - 1): S_p[i][i] = singular_vals[i] compressed = combine(U[:,:k-1], S_p, V[:k-1,:]) ss = ssim(img, compressed, dynamic_range=compressed.max()-compressed.min()) if abs(ss - target_ss) < abs(last_ss - target_ss): last_ss = ss k -= 1 else: break print "Best k found %r with ssim %r" % (k, last_ss) return compressed
def test_mssim_mixed_dtype():
mssim = ssim(cam, cam_noisy)
with expected_warnings(['Inputs have mismatched dtype']):
mssim_mixed = ssim(cam, cam_noisy.astype(np.float32))
assert_almost_equal(mssim, mssim_mixed)
# no warning when user supplies data_range
mssim_mixed = ssim(cam, cam_noisy.astype(np.float32), data_range=255)
assert_almost_equal(mssim, mssim_mixed)
def test_ssim_image():
N = 100
X = (np.random.random((N, N)) * 255).astype(np.uint8)
Y = (np.random.random((N, N)) * 255).astype(np.uint8)
S0 = ssim(X, X, win_size=3)
assert_equal(S0, 1)
S1 = ssim(X, Y, win_size=3)
assert(S1 < 0.3)
def test_ssim_grad():
N = 30
X = np.random.random((N, N)) * 255
Y = np.random.random((N, N)) * 255
f = ssim(X, Y, dynamic_range=255)
g = ssim(X, Y, dynamic_range=255, gradient=True)
assert f < 0.05
assert g[0] < 0.05
assert np.all(g[1] < 0.05)
def find_flat(self, image, flat):
best = [0, 0]
for f in range(flat.shape[2]):
if cut:
rms = ssim(image, flat[:, :, f])
else:
rms = ssim(image[a:c, b:d], flat[a:c, b:d, f])
if rms > best[0]:
best = [rms, f]
arr = image / flat[:, :, best[1]]
return arr
def do_all_metrics(comparison_dict):
pairs_lvl0 = [k for k in comparison_dict.iterkeys()]
for p in pairs_lvl0:
data_keys = [j for j in comparison_dict[p].iterkeys()]
regex = re.compile('2')
snow = [string for string in data_keys if re.match(regex, string)]
comparison_dict[p]['MSE'] = round(mse(comparison_dict[p][data_keys[0]],
comparison_dict[p][data_keys[1]]),3)
comparison_dict[p]['SSIM'] = round(ssim(comparison_dict[p][data_keys[0]],
comparison_dict[p][data_keys[1]]),3)
comparison_dict[p]['MSE Map'] = (comparison_dict[p][data_keys[0]] -
comparison_dict[p][data_keys[1]])**2
comparison_dict[p]['SSIM Map'] = ssim(comparison_dict[p][data_keys[0]],
comparison_dict[p][data_keys[1]],
full = True)[1]
comparison_dict[p]['CW-SSIM'] = cw_ssim(comparison_dict[p][data_keys[0]],
comparison_dict[p][data_keys[1]], 40)[0]
comparison_dict[p]['CW-SSIM Map'] = cw_ssim(comparison_dict[p][data_keys[0]],
comparison_dict[p][data_keys[1]], 40)[1]
comparison_dict[p]['GMS'] = gmsd(comparison_dict[p][snow[0]],
comparison_dict[p][snow[1]])[0]
comparison_dict[p]['GMS Map'] = gmsd(comparison_dict[p][snow[0]],
comparison_dict[p][snow[1]])[1]
comparison_dict[p][snow[0]+' DCT Map'] = discrete_cosine(comparison_dict[p][snow[0]],
comparison_dict[p][snow[1]])[0]
comparison_dict[p][snow[1]+' DCT Map'] = discrete_cosine(comparison_dict[p][snow[0]],
comparison_dict[p][snow[1]])[1]
comparison_dict[p][snow[0]+' DCT Curve'] = discrete_cosine(comparison_dict[p][snow[0]],
comparison_dict[p][snow[1]])[2]
comparison_dict[p][snow[1]+' DCT Curve'] = discrete_cosine(comparison_dict[p][snow[0]],
comparison_dict[p][snow[1]])[3]
comparison_dict[p]['FSIM'] = feature_sim(comparison_dict[p][snow[0]],
comparison_dict[p][snow[1]])
def test_ssim_multichannel_chelsea():
# color image example
Xc = data.chelsea()
sigma = 15.0
Yc = np.clip(Xc + sigma * np.random.randn(*Xc.shape), 0, 255)
Yc = Yc.astype(Xc.dtype)
# multichannel result should be mean of the individual channel results
mssim = ssim(Xc, Yc, multichannel=True)
mssim_sep = [ssim(Yc[..., c], Xc[..., c]) for c in range(Xc.shape[-1])]
assert_almost_equal(mssim, np.mean(mssim_sep))
# ssim of image with itself should be 1.0
assert_equal(ssim(Xc, Xc, multichannel=True), 1.0)
def test_ssim_dtype():
N = 30
X = np.random.rand(N, N)
Y = np.random.rand(N, N)
S1 = ssim(X, Y)
X = (X * 255).astype(np.uint8)
Y = (X * 255).astype(np.uint8)
S2 = ssim(X, Y)
assert S1 < 0.1
assert S2 < 0.1
def test_ssim_dynamic_range_and_data_range():
# Tests deprecation of "dynamic_range" in favor of "data_range"
N = 30
X = np.random.rand(N, N) * 255
Y = np.random.rand(N, N) * 255
with expected_warnings(
'`dynamic_range` has been deprecated in favor of '
'`data_range`. The `dynamic_range` keyword argument '
'will be removed in v0.14'):
out2 = ssim(X, Y, dynamic_range=255)
out1 = ssim(X, Y, data_range=255)
assert_equal(out1, out2)
def test_ssim_grad():
N = 30
X = np.random.rand(N, N) * 255
Y = np.random.rand(N, N) * 255
f = ssim(X, Y, data_range=255)
g = ssim(X, Y, data_range=255, gradient=True)
assert f < 0.05
assert g[0] < 0.05
assert np.all(g[1] < 0.05)
mssim, grad, s = ssim(X, Y, data_range=255, gradient=True, full=True)
assert np.all(grad < 0.05)
def compare_images(imageA, imageB, title):
# compute the mean squared error and structural similarity
# index for the images
m = mse(imageA, imageB)
print title
print m
print "-----"
s = ssim(imageA, imageB)
# setup the figure
fig = plt.figure(title)
plt.suptitle("MSE: %.2f, SSIM: %.2f" % (m, s))
#plt.suptitle("MSE: %.2f, SSIM: ??" % (m))
# show first image
ax = fig.add_subplot(1, 2, 1)
plt.imshow(imageA, cmap=plt.cm.gray)
plt.axis("off")
# show the second image
ax = fig.add_subplot(1, 2, 2)
plt.imshow(imageB, cmap=plt.cm.gray)
plt.axis("off")
# show the images
plt.show()
def compare_images(imageA, imageB, title, show_plot=True):
# compute the mean squared error and structural similarity
# index for the images
m = mse(imageA, imageB)
s = ssim(imageA, imageB)
if show_plot:
import matplotlib.pyplot as plt
# setup the figure
fig, ax = plt.subplots(1, 2)
fig.suptitle("%s\nMSE: %.5f, SSIM: %.5f" % (title, m, s))
# show first image
ax[0].imshow(imageA, cmap=plt.cm.gray)
ax[0].axis("off")
# show the second image
ax[1].imshow(imageB, cmap=plt.cm.gray)
ax[1].axis("off")
# show the images
plt.show()
return m, s
def compare_in_path(path):
filenames = [f for f in os.listdir(path) if os.path.isfile(os.path.join(path, f))]
# shuffle because I started the script several times without finishing the process
random.shuffle(filenames)
counter = 0
for idx, f1 in enumerate(filenames):
# don't compare two files twice
for f2 in filenames[(idx+1):]:
a1 = io.imread(os.path.join(path, f1))
a2 = io.imread(os.path.join(path, f2))
s = ssim(a1, a2, multichannel=True)
# 0.5 seems reasonable, but one could try around here (maybe 0.4)
if s > 0.5:
print(f1 + ' ' + f2 + '\t\t' + str(s))
# remove the second file
os.remove(os.path.join(path, f2))
filenames.remove(f2)
counter += 1
print (' * ' + str(counter) + ' * ' )
if counter > 100: break
def compare_images(imageA, imageB, title, plot=True):
'''
Compute the mean squared error and structural similarity
index for the images
'''
m,p = mse(imageA, imageB)
s = ssim(imageA, imageB)
if DEBUG:
print '\tMSE: {0} PNSR: {1} SSIM {2}'.format(m,p,s)
if not plot:
return m,p,s
# setup the figure
fig = plt.figure(title)
plt.suptitle("MSE: %.2f, SSIM: %.2f" % (m, s))
# show first image
ax = fig.add_subplot(1, 2, 1)
plt.imshow(imageA, cmap = plt.cm.gray)
plt.axis("off")
# show the second image
ax = fig.add_subplot(1, 2, 2)
plt.imshow(imageB, cmap = plt.cm.gray)
plt.axis("off")
# show the images
plt.show()
return m,p,s
def cal_similarity(image_name, image_files, directory):
# rdb.set_trace()
original = io.imread(os.path.join(directory, image_name))
original = rgb2gray(original)
similarity = {}
for image in image_files:
if image_name != image:
compare = rgb2gray(io.imread(os.path.join(directory, image)))
sim = ssim(original, compare)
if len(similarity) >= 2:
min_ssim = min(similarity, key=similarity.get)
if sim > similarity[min_ssim]:
del similarity[min_ssim]
else:
continue
similarity[image] = sim
# update the cache
if image in redis_cache.keys():
image_similarity = pickle.loads(redis_cache.get(image))
if len(image_similarity) < 2:
image_similarity[image_name] = sim
redis_cache.set(image, pickle.dumps(image_similarity, pickle.HIGHEST_PROTOCOL))
min_ssim = min(image_similarity, key=image_similarity.get)
if sim > image_similarity[min_ssim]:
del image_similarity[min_ssim]
image_similarity[image_name] = sim
redis_cache.set(image, pickle.dumps(image_similarity, pickle.HIGHEST_PROTOCOL))
return similarity
def test_invalid_input():
# size mismatch
X = np.zeros((9, 9), dtype=np.double)
Y = np.zeros((8, 8), dtype=np.double)
with testing.raises(ValueError):
ssim(X, Y)
# win_size exceeds image extent
with testing.raises(ValueError):
ssim(X, X, win_size=X.shape[0] + 1)
# some kwarg inputs must be non-negative
with testing.raises(ValueError):
ssim(X, X, K1=-0.1)
with testing.raises(ValueError):
ssim(X, X, K2=-0.1)
with testing.raises(ValueError):
ssim(X, X, sigma=-1.0)
def compare_images(imageA, imageB):
# compute the mean squared error and structural similarity
# index for the images
m = mse(imageA, imageB)
s = ssim(color.rgb2gray(imageA), color.rgb2gray(imageB))
if(m>500):print(m)
if(s<0.85): print(s)
def calc_statistics(suffix_to_nifti):
"""
Get dictionary - suffix to nifti, return statistics
:param suffix_to_nifti:
:return:
"""
reg_img = suffix_to_nifti[''].get_data()
mse = {}
ssim_ = {}
num_of_cls = len(CLASSES)
for (ver_name, ver_nifti) in suffix_to_nifti.iteritems():
if ver_name == '':
mse[ver_name] = num_of_cls*[0.0]
ssim_[ver_name] = num_of_cls*[1.0]
continue
data = ver_nifti.get_data()
mse_temp = []
mse_cls = np.mean(np.sum(((data - reg_img))**2, axis=(0,1)))
mse_temp.append(mse_cls)
ssim_temp = ssim(X=reg_img, Y=data, data_range=data.max() - data.min())
mse[ver_name] = mse_temp
ssim_[ver_name] = ssim_temp
return mse, ssim_
def test_gaussian_mssim_vs_IPOL():
# Tests vs. imdiff result from the following IPOL article and code:
# https://www.ipol.im/pub/art/2011/g_lmii/
mssim_IPOL = 0.327309966087341
mssim = ssim(cam, cam_noisy, gaussian_weights=True,
use_sample_covariance=False)
assert_almost_equal(mssim, mssim_IPOL, decimal=3)
def compute_loss(reconstructed_output, original, loss_type):
"""
Computes the loss associated with an MR image slice
and a reconstruction of the slice after subsampling.
The loss function is specified by `loss_type`
Parameters
------------
reconstructed_output : np.ndarray
The reconstructed MR image slice, represented as a
numpy array with datatype `np.float32`
original : np.ndarray
The original MR image slice (before subsampling),
represented as a numpy array with datatype `np.float32`
loss_type : str
The type of loss to compute (either 'mse' or 'mae')
Returns
------------
float
The specified loss computed between the
reconstructed slice and the original slice
"""
output = np.array(reconstructed_output, dtype=np.float64) / 255.0
original = np.array(original, dtype=np.float64) / 255.0
if loss_type == LOSS_TYPE_MSE:
return np.mean((reconstructed_output - original)**2)
elif loss_type == LOSS_TYPE_SSIM:
return ssim(reconstructed_output, original)
else:
raise Exception("Attempted to compute an invalid loss!")
def compare(file1, file2):
image1 = io.imread(file1, as_grey = True)
image2 = io.imread(file2, as_grey = True)
image1 = feature.canny(image1)
image2 = feature.canny(image2)
return ssim(image1, image2)
def compare_images(imageA, imageB):
# compute the mean squared error and structural similarity
# index for the images
m = mse(imageA, imageB)
s = ssim(imageA, imageB)
return round(m,2), round(s,2)
def matchFindNonORB(TestImName, RefImName,TestIm,RefIm, Method): """ Inputs: two strings: an image name, TestImName, and the name of a reference image, RefImName, a string containing the specified Method used to compare the images an optional parameter: the number of distances, NumDist, which will perform the operations on a subset of the information provided Any number greater than 0 for NumDist will truncate the distances Outputs: a number, answer, that comes from the comparison method used between the two images """ if TestImName == RefImName: #if an image is tested against itself, let's save time by returning a value eliminating it from contention... if Method == 'ssim': #for these methods, higher is better, so we return a huge value return 1000000 else: #otherwise, return -1, a number lower than any value we should see... return -1 answer = 0 """Now, the user chooses the method, and the answer gets returned accordingly """ if Method == 'mse': #mean squared error answer = mse(TestIm,RefIm) elif Method == 'ssim': #structural similarity index answer = ssim(TestIm,RefIm) elif Method == 'rms': #root means squared difference between pixels answer = rms(TestIm,RefIm) elif Method == 'ccv2': answer = ccv2.main(TestImName,RefImName) #print TestIm, answer return answer
def compare_images(imageA, imageB, title, show_plot=True):
"""
computes the mean squared error and structural similarity
"""
# index values for mean squared error
if VERBOSE: print("comparing mean squared error...")
m = mse(imageA, imageB)
# convert the images to grayscale
if VERBOSE: print("converting to greyscale...")
imageA_grey = rgb2grey(imageA)
imageB_grey = rgb2grey(imageB)
# uses image copies to avoid runtime warning for ssim computation
img1_grey = np.copy(imageA_grey)
img2_grey = np.copy(imageB_grey)
# index values for structural similarity
if VERBOSE: print("comparing structural similarity...")
s = ssim(img1_grey, img2_grey)
if show_plot:
if VERBOSE: print("plotting images...")
try:
import matplotlib.pyplot as plt
except:
print("Error importing pyplot from matplotlib, please install matplotlib package first...")
sys.tracebacklimit=0
raise Exception("Importing matplotlib failed")
# setup the figure
fig, ax = plt.subplots(2, 2)
fig.suptitle("%s\nMSE: %.5f, SSIM: %.5f" % (title, m, s))
ax[0][0].text(-10, -10, 'MSE: %.5f' %(m))
# show first image
ax[0][0].imshow(imageA, cmap=plt.cm.gray)
ax[0][0].axis("off")
# show the second image
ax[0][1].imshow(imageB, cmap=plt.cm.gray)
ax[0][1].axis("off")
ax[1][0].text(-10, -10, 'SSIM: %.5f' %(s))
# show first grey image
ax[1][0].imshow(img1_grey, cmap=plt.cm.gray)
ax[1][0].axis("off")
# show the second grey image
ax[1][1].imshow(img2_grey, cmap=plt.cm.gray)
ax[1][1].axis("off")
# show the images
plt.show()
return m, s
def compare_to_last_info(img):
global temp_img
if temp_img is not None:
s = ssim(img, temp_img)
else:
s = 0
temp_img = img
return s
def Compare_images(imageA, imageB):
# compute the mean squared error and structural similarity
# index for the images
imageA = cv2.cvtColor(imageA, cv2.COLOR_BGR2GRAY)
imageB = cv2.cvtColor(imageB, cv2.COLOR_BGR2GRAY)
m = mse(imageA, imageB)
s = ssim(imageA, imageB)
return m,s
def build_score(label,_list):
model = get_model(label)
_score = []
for im in _list:
#print 'im shape', im.shape
#print 'model shape', model.shape
_score.append(ssim(im,model))
return _score
}
harm = sess.run(harmnization, feed_dict=feed_dict)
harm_rgb = np.squeeze(harm)
harm_rgb = np.multiply(harm_rgb, np.array(127.5))
harm_rgb += np.array((127.5, 127.5, 127.5))
harm_rgb = harm_rgb[:, :, ::-1]
neg_idx = harm_rgb < 0.0
harm_rgb[neg_idx] = 0.0
pos_idx = harm_rgb > 255.0
harm_rgb[pos_idx] = 255.0
name = get_name(path_img[i])
truth1 = Image.open(os.path.join(FLAGS.data_dir, path_truth[i]))
truth1 = truth1.resize([256, 256], Image.BICUBIC)
truth1 = np.array(truth1, dtype=np.float32)
mse_score = mse(harm_rgb, truth1)
psnr_score = psnr(truth1,
harm_rgb,
data_range=harm_rgb.max() - harm_rgb.min())
ssim_score = ssim(truth1,
harm_rgb,
data_range=harm_rgb.max() - harm_rgb.min(),
multichannel=True)
file.writelines('%s\t%f\t%f\t%f\n' %
(name, mse_score, psnr_score, ssim_score))
print(i, name, mse_score, psnr_score, ssim_score)
sess.close()
print('Done!')
def cmpSSIM(self, img1, img2):
#对相同分辨率的图进行结构相似性评价，表示失真程度，值越大，失真越小， 取值范围[0,1]
#0.5作为失真的阈值，即两张图变化较大
return ssim(img1, img2, multichannel=True)
return 20 * math.log10(PIXEL_MAX / math.sqrt(mse))
# base_name = "reference"
# ref_img = cv.imread(base_name+".png")
# in_img = cv.imread(base_name+"_cubic.png")
# out_img = cv.imread(base_name+"_out.png")
base_name = "jk9"
ref_img = cv.imread(base_name + ".jpg")
in_img = cv.imread(base_name + "_cubic.png")
out_img = cv.imread(base_name + "_out.png")
# calculate psnr
test_gray = cv.cvtColor(ref_img, cv.COLOR_RGB2GRAY)
cubic_gray = cv.cvtColor(in_img, cv.COLOR_RGB2GRAY)
out_gray = cv.cvtColor(out_img, cv.COLOR_RGB2GRAY)
print test_gray.shape, cubic_gray.shape, out_gray.shape
psnr_cubic = psnr(test_gray, cubic_gray)
psnr_output = psnr(test_gray, out_gray)
ssim_cubic = ssim(test_gray, cubic_gray)
ssim_output = ssim(test_gray, out_gray)
print("cubic interpolation psnr is:" + str(psnr_cubic) + "; " +
"predict psnr is:" + str(psnr_output))
print("cubic interpolation ssim is:" + str(ssim_cubic) + "; " +
"predict ssim is:" + str(ssim_output))
picAnm = cv2.imread(picpath + "screenshotnomarkersA.png")
picA = cv2.imread(picpath + "screenshotA.png")
picBnm = cv2.imread(picpath + "screenshotnomarkersB.png")
picB = cv2.imread(picpath + "screenshotB.png")
picCnm = cv2.imread(picpath + "screenshotnomarkersC.png")
picC = cv2.imread(picpath + "screenshotC.png")
picA = cv2.cvtColor(picA, cv2.COLOR_BGR2GRAY)
picAnm = cv2.cvtColor(picAnm, cv2.COLOR_BGR2GRAY)
picB = cv2.cvtColor(picB, cv2.COLOR_BGR2GRAY)
picBnm = cv2.cvtColor(picBnm, cv2.COLOR_BGR2GRAY)
picC = cv2.cvtColor(picC, cv2.COLOR_BGR2GRAY)
picCnm = cv2.cvtColor(picCnm, cv2.COLOR_BGR2GRAY)
difvalue = ssim(picA, picAnm) #1 is same, -1 is totally different
print("dif between A and Anm:")
print(difvalue)
print("pic A vs pic B: ", ssim(picA, picB))
print("pic A vs pic C: ", ssim(picA, picC))
print("pic C vs pic B: ", ssim(picC, picB))
print("pic Anm vs pic Bnm:", ssim(picAnm, picBnm))
print("pic Anm vs pic Cnm:", ssim(picAnm, picCnm))
print("pic Cnm vs pic Bnm:", ssim(picCnm, picBnm))
print("pic A vs pic Bnm: ", ssim(picA, picBnm))
print("pic A vs pic Cnm: ", ssim(picA, picCnm))
print("pic C vs pic Bnm: ", ssim(picC, picBnm))
sigma11 = signal.fftconvolve(img1 * img1, window, mode='valid')
sigma22 = signal.fftconvolve(img2 * img2, window, mode='valid')
sigma12 = signal.fftconvolve(img1 * img2, window, mode='valid')
else:
# Empty blur kernel so no need to convolve.
mu1, mu2 = img1, img2
sigma11 = img1 * img1
sigma22 = img2 * img2
sigma12 = img1 * img2
mu11 = mu1 * mu1
mu22 = mu2 * mu2
mu12 = mu1 * mu2
sigma11 -= mu11
sigma22 -= mu22
sigma12 -= mu12
# Calculate intermediate values used by both ssim and cs_map.
c1 = (k1 * max_val) ** 2
c2 = (k2 * max_val) ** 2
v1 = 2.0 * sigma12 + c2
v2 = sigma11 + sigma22 + c2
ssim = np.mean((((2.0 * mu12 + c1) * v1) / ((mu11 + mu22 + c1) * v2)))
cs = np.mean(v1 / v2)
return ssim, cs
print('ms-ssim: {}'.format(MultiScaleSSIM(image1_1,image2_1)))
print('ssim: {}'.format(1-ssim(image1, image2)))
print('mse: {}'.format(mse(image1,image2)))
def calculate_fitness_ssim(self, goal):
# calculates structural similarity index image difference (higher = more similar)
ssim_index = ssim(self.array, goal, multichannel=True)
self.fitness = ssim_index
# Choose a starting point
x = fbp(sinogram_data)
with odl.util.Timer('runtime of solver'):
# Run the algorithm
x = admm_system_solve.admm_solver(x,
f,
g,
radon_transform_operator,
tau=tau,
sigma=sigma,
niter=niter,
data=sinogram_data,
space=space,
solver="gmres")
print('ssim = {}'.format(ssim(phantom.asarray(), x.asarray())))
print('psnr = {}'.format(
psnr(phantom.asarray(),
x.asarray(),
data_range=np.max(phantom) - np.min(phantom))))
# Display images
figure_folder = 'Results'
x.show('', clim=[0, 1], saveto='Results/' + 'shepp_logan_tv_solver')
x.show('',
clim=[0.1, 0.4],
saveto='Results/' + 'shepp_logan_tv_windowed_solver')
def test_sampling(conf, training_result):
"""
Sampling rate vs Reconstruction Quality test.
Parameters
----------
conf : conf_loader.Conf
Experiment parameters
training_result : touple
Retrun values of function `training`
Returns
-------
srange : np.array
sampling rate used
(bk_mse, fa_mse, rc_mse) : (np.array, np.array, np.array)
mse for `k-best`, `f_avg` and `LSC` methods at different sampling rate
(bk_ssim, fa_ssim, rc_ssim) : (np.array, np.array, np.array)
ssim for `k-best`, `f_avg` and `LSC` methods at different saapling rate
"""
# matrxi to vector (m2v) and vector to matrix (v2m) functions
m2v, v2m = conf.vect_functions()
(sort, tros), (energy, comulated, bands), codebooks = training_result
n_bands = conf.nbands
subcfg = conf.testing['reconstruction']
# Load testing set
testing, Testing = common.load_dataset(conf.testingset_path(),
conf.fformat, conf.size())
FlatTst = m2v(Testing)[:, sort]
# f_avg sampling pattern
Omega = energy.argsort()[::-1]
# lsc sampling pattern
Omegas = [c.sampling_pattern() for c in codebooks]
shape = testing[0].shape
n = np.prod(shape)
N = len(testing)
# sampling rate range
srange = np.logspace(*subcfg['sampling_range'])
# results accumulator
bk_mse = np.zeros(len(srange))
fa_mse = np.zeros(len(srange))
rc_mse = np.zeros(len(srange))
bk_ssim = np.zeros(len(srange))
fa_ssim = np.zeros(len(srange))
rc_ssim = np.zeros(len(srange))
print('Sampling Rate vs Reconstruction Quality Test:')
for i, rate in enumerate(srange):
print(f'\r {i+1:3d}/{len(srange)}', flush=True, end='')
M = int(round(n * rate))
m = int(round(M / n_bands))
ms = lsc.num_samples(bands, m)
M = np.sum(ms)
smalls = [omega[:y] for omega, y in zip(Omegas, ms)]
for idx in range(N):
reference = common.norm(testing[idx])
X = FlatTst[idx]
Xsbs = lsc.split(X, bands)
Ysbs = lsc.sub_sample(Xsbs, Omegas, m)
recovered = [
codebooks[b].reconstruct(Ysbs[b], smalls[b])
for b in range(len(bands))
]
Y = v2m((lsc.union(recovered))[tros], shape)
y = common.norm(common.pos(common.ifft2(Y).real))
BK = X.copy()[tros]
# BK sampling pattern
O = np.abs(BK).argsort()[::-1]
BK[O[M:]] = 0
BK = v2m(BK, shape)
bK = common.norm(common.pos(common.ifft2(BK).real))
FA = X.copy()[tros]
FA[Omega[M:]] = 0
FA = v2m(FA, shape)
fA = common.norm(common.pos(common.ifft2(FA).real))
fa_mse[i] += mse(reference, fA) / N
bk_mse[i] += mse(reference, bK) / N
rc_mse[i] += mse(reference, y) / N
fa_ssim[i] += ssim(reference, fA, gaussian_weights=True) / N
bk_ssim[i] += ssim(reference, bK, gaussian_weights=True) / N
rc_ssim[i] += ssim(reference, y, gaussian_weights=True) / N
print('\t[done]')
return srange, (bk_mse, fa_mse, rc_mse), (bk_ssim, fa_ssim, rc_ssim)
def call_detect():
global finalImage
global avgX
global avgY
global detected
h, w = template.shape
while True:
#start = time.time()
clone = image
gray = cv2.cvtColor(clone, cv2.COLOR_BGR2GRAY)
found = None
# loop over the scales of the image
for scale in np.linspace(2.4, 0.2, 10)[::-1]:
# resize the image according to the scale, and keep track
# of the ratio of the resizing
resized = imutils.resize(gray, width=int(gray.shape[1] * scale))
r = gray.shape[1] / float(resized.shape[1])
# if the resized image is smaller than the template, then break
# from the loop
if resized.shape[0] < tH or resized.shape[1] < tW:
break
# detect edges in the resized, grayscale image and apply template
# matching to find the template in the image
edged = cv2.Canny(resized, 50, 200)
result = cv2.matchTemplate(edged, template, cv2.TM_CCOEFF)
(_, maxVal, _, maxLoc) = cv2.minMaxLoc(result)
# if we have found a new maximum correlation value, then ipdate
# the bookkeeping variable
if found is None or maxVal > found[0]:
found = (maxVal, maxLoc, r)
(startX, startY) = (int(maxLoc[0] * r), int(maxLoc[1] * r))
(endX, endY) = (int((maxLoc[0] + tW) * r), int((maxLoc[1] + tH) * r))
resized = gray[startY:endY, startX:endX]
resized = cv2.resize(resized, (w, h))
if ssim(original, resized) > 0.2:
break
# unpack the bookkeeping varaible and compute the (x, y) coordinates
# of the bounding box based on the resized ratio
(_, maxLoc, r) = found
(startX, startY) = (int(maxLoc[0] * r), int(maxLoc[1] * r))
(endX, endY) = (int((maxLoc[0] + tW) * r), int((maxLoc[1] + tH) * r))
resized = gray[startY:endY, startX:endX]
resized = cv2.resize(resized, (w, h))
if ssim(original, resized) > 0.2:
# draw a bounding box around the detected result and display the image
cv2.rectangle(clone, (startX, startY), (endX, endY), (0, 0, 255), 2)
finalImage = clone
avgX = (startX + endX) / 2
avgY = (startY + endY) / 2
detected = True
else:
detected = False
cv2.imwrite(FaceFileName, resized) #saving captured faces
cv2.imshow('Video', frame) #playing the video in new window
if cv2.waitKey(1) & 0xFF == ord('q'): #for quitting
break
print(time.ctime())
print("face count is", count)
cap.release()
cv2.destroyAllWindows()
for i in range(count):
for j in range(i + 1, count):
a = list1[i]
b = list1[j]
c = cv2.imread(a) #reading an image
d = cv2.imread(b)
c = cv2.cvtColor(c, cv2.COLOR_BGR2GRAY) #for changing colorspaces
d = cv2.cvtColor(d, cv2.COLOR_BGR2GRAY)
s = ssim(
c, d) #structural similarity index for pixel by pixel comparision
if s > 0.5:
list2.append(b) #appending similar faces
for k in range(len(list2) + 1):
try:
os.remove(list2[k]) #removing similar faces
except FileNotFoundError:
continue
except IndexError:
print("Done")
def ssimf(img, img2):
ssim_v = ssim(img, img2, data_range=img2.max() - img2.min() + e)
return ssim_v
psnr = 20 * np.log10((np.max(x_test_org) - np.min(x_test_org)) / np.sqrt(mse))
print(psnr)
ssim_mnist = np.zeros(x_test_org.shape[0])
for i in range(0, x_test_org.shape[0]):
img1 = x_test_org[i]
img2 = x_rec[i]
if nc == 3:
img_true = np.zeros((img1.shape[1], img1.shape[2], img1.shape[0]))
img_rec = np.zeros((img2.shape[1], img2.shape[2], img2.shape[0]))
for chan in range(0, nc):
img_true[:, :, chan] = img1[chan, :, :]
img_rec[:, :, chan] = img2[chan, :, :]
ssim_mnist[i] = ssim(img_true,
img_rec,
data_range=img_rec.max() - img_rec.min(),
multichannel=True)
elif nc == 1:
img_true = img1.reshape(ngf, ndf * multiple)
img_rec = img2.reshape(ngf, ndf * multiple)
ssim_mnist[i] = ssim(img_true,
img_rec,
data_range=img_rec.max() - img_rec.min())
print(np.mean(ssim_mnist))
sub_dim_ssim.append(np.mean(ssim_mnist))
sub_dim_mse.append(mse)
sub_dim_psnr.append(psnr)
sub_dim_rec.append(x_rec)
# print(subtype)
# print(test_alpha)
import cv2
import numpy as np
from skimage.measure import compare_ssim as ssim
x0 = cv2.imread("test_images/testmap0.png")
x1 = cv2.imread("test_images/parking.png")
# x2 = cv2.imread("test_images/tleft.png")
# x3 = cv2.imread("test_images/tright.png")
x4 = cv2.imread("test_images/tnormal.png")
x5 = cv2.imread("test_images/x.png")
s1 = ssim(x0, x1, multichannel=True)
# s2 = ssim(x0, x2, multichannel=True)
# s3 = ssim(x0, x3, multichannel=True)
s4 = ssim(x0, x4, multichannel=True)
s5 = ssim(x0, x5, multichannel=True)
# sm = min(s2, s3, s4, s5)
sm = min(s4, s5)
print(" ")
# if (sm == s2) and s1 != 1 and s3 != 1 and s4 != 1 and s5 != 1:
# print("Image is T-Left")
# if (sm == s3) and s1 != 1 and s2 != 1 and s4 != 1 and s5 != 1:
# print("Image is T-Right")
# if sm == s4 and s1 != 1 and s3 != 1 and s2 != 1 and s5 != 1:
# print("Image is T-Normal")
# if sm == s5 and s1 != 1 and s3 != 1 and s4 != 1 and s2 != 1:
# print("Image is Cross-X")
## Compute PSNR and SSIM en test set
out = model.predict(x_test)*255
outIllusions = model.predict(illusions)
performance = np.zeros((x_test.shape[0],2))
# PSNR
for i in range(x_test.shape[0]):
performance[i,0] = psnr(y_test[i,:,:,:]*255,out[i,:,:,:],data_range=255)
# SSIM
for i in range(x_test.shape[0]):
performance[i,1] = ssim(y_test[i,:,:,:]*255, out[i,:,:,:], data_range=255, gaussian_weights=True
, sigma = 1.5, use_sample_covariance=False,multichannel=True)
## Save results
file = open(saveDir+'Illusions_r'+str(kernel_s)+'_nk'+str(numKernels)+'_p'+str(poolSize)+'.txt','w')
file.write('Mean PSNR'+str(np.mean(performance[:,0]))+'-'+str(np.std(performance[:,0])))
file.write('Mean SSIM'+str(np.mean(performance[:,1]))+'-'+str(np.std(performance[:,1])))
file.write(chkpt)
file.close()
#np.save(saveDir+'jean_denoise_results',out)
print('Saving Results ...')
np.save(saveDir+'Illusions_r'+str(kernel_s)+'_nk'+str(numKernels)+'_p'+str(poolSize),outIllusions)
#np.save(saveDir+'jean_denoise_inputs',x_test)
#np.save(saveDir+'jean_denoise_labels',y_test)
def evaluate_quality(image_a, ref_image):
ssim_value = ssim(img_a, ref_image, data_range=img_a.max() - img_a.min())
return ssim_value
fig, axes = plt.subplots(nrows=1,
ncols=5,
figsize=(10, 4),
sharex=True,
sharey=True)
ax = axes.ravel()
def mse(x, y):
return np.linalg.norm(x - y)
best = cv2.imread('fourier_1_BestEnhanced.jpg', 0)
mse_none = mse(best, best)
ssim_none = ssim(best, best, data_range=best.max() - best.min())
mse_eq = mse(best, equ)
ssim_eq = ssim(best, equ, data_range=equ.max() - equ.min())
mse_log = mse(best, img_log)
ssim_log = ssim(best, img_log, data_range=img_log.max() - img_log.min())
mse_g1 = mse(best, adjusted)
ssim_g1 = ssim(best, adjusted, data_range=adjusted.max() - adjusted.min())
mse_g2 = mse(best, adjusted_2)
ssim_g2 = ssim(best,
adjusted_2,
data_range=adjusted_2.max() - adjusted_2.min())
TEST_IMAGE = TEST_IMAGE[:, :, 1]
TEST_IMAGE = scipy.misc.imresize(TEST_IMAGE, [64, 64])
TEST_IMAGE = TEST_IMAGE.astype("float64")
nn = 4**7
M = 4**7
HADAMARD_MASKS = generate_hadamard(TEST_IMAGE.shape[0], nn)
np.random.shuffle(HADAMARD_MASKS)
result = np.ones(TEST_IMAGE.shape)
for i in range(0, M):
mask = HADAMARD_MASKS[i] == 1
mask = mask * 1
masked = TEST_IMAGE * HADAMARD_MASKS[i]
intensity = masked.sum(dtype="float64")
pixels = HADAMARD_MASKS[i].sum(dtype="float64")
result += intensity * HADAMARD_MASKS[i]
result = skimage.exposure.rescale_intensity(result, out_range=(0, 255))
print ssim(result, TEST_IMAGE)
fig = plt.figure()
fig.add_subplot(1, 2, 1)
plt.gray()
plt.imshow(TEST_IMAGE)
fig.add_subplot(1, 2, 2)
plt.imshow(result)
plt.show()
h_dot = grad(l, counts[mm], dark[mm], flat[mm])
L_dot = fast_transp[mm](h_dot)
x = x - M * L_dot / d_star
#subiter_time[mm] = time.time()-subiter_start
#subseth[mm] = np.sum(hreg(l,counts[mm],dark[mm],flat[mm]))
#Store time immediately after iteration
#iteration_time = np.sum(subiter_time)
iteration_time = time.time() - iter_begin
if n == 0:
T[n, 0] = iteration_time - start_time + iter_begin
else:
T[n, 0] = iteration_time + T[n - 1, 0]
itr += 1
print 'Iteration:', itr
SSIM[n, 0] = ssim(IMAGE, x)
#compute elapsed time
#Compute and store objective function
obj[n, 0] = np.sum(hreg(ffast_radon(x), tmp_counts, tmp_dark,
tmp_flat))
#Keep track of itreations
# Save objective function and time values
sd.saveme(obj, T, SSIM, N, M, 'OSTR')
#Display Time and Objective function vectors.
# print(T)
# print(obj)
# print('end outputs')
#Compute objective function decrease
PhiTb = FFT_Mask_ForBack()(batch_x, mask)
[x_output, loss_layers_sym] = model(PhiTb, mask)
end = time()
initial_result = PhiTb.cpu().data.numpy().reshape(256, 256)
Prediction_value = x_output.cpu().data.numpy().reshape(256, 256)
X_init = np.clip(initial_result, 0, 1).astype(np.float64)
X_rec = np.clip(Prediction_value, 0, 1).astype(np.float64)
init_PSNR = psnr(X_init * 255, Iorg.astype(np.float64))
init_SSIM = ssim(X_init * 255, Iorg.astype(np.float64), data_range=255)
rec_PSNR = psnr(X_rec * 255., Iorg.astype(np.float64))
rec_SSIM = ssim(X_rec * 255., Iorg.astype(np.float64), data_range=255)
print(
"[%02d/%02d] Run time for %s is %.4f, Initial PSNR is %.2f, Initial SSIM is %.4f"
% (img_no, ImgNum, imgName, (end - start), init_PSNR, init_SSIM))
print(
"[%02d/%02d] Run time for %s is %.4f, Proposed PSNR is %.2f, Proposed SSIM is %.4f"
% (img_no, ImgNum, imgName, (end - start), rec_PSNR, rec_SSIM))
im_rec_rgb = np.clip(X_rec * 255, 0, 255).astype(np.uint8)
resultName = imgName.replace(args.data_dir, args.result_dir)
cv2.imwrite(
list_image_parth.append(image_path)
return np.array(list_of_images)
def psnrr(image1, image2):
mse = np.mean((image1 - image2)**2)
if mse == 0:
return 100
MAX = 255.0
return 20 * math.log10(MAX / math.sqrt(mse))
inp = load_dataset(
"/home/jim/Desktop/Ptuxiaki/TensorFlow/Dataset/MNIST/inpainting/autoencoder/predicted(half)/"
)
labels = load_dataset(
"/home/jim/Desktop/Ptuxiaki/TensorFlow/Dataset/MNIST/testing_labels2/")
total_psnr = 0
total_ssim = 0
for i in range(TEST_NUMBER):
image = labels[i].reshape((28, 28), order='C')
image_noisy = inp[i].reshape((28, 28), order='C')
total_psnr += psnrr(image, image_noisy)
total_ssim += ssim(image,
image_noisy,
data_range=image_noisy.max() - image_noisy.min())
#imageio.imwrite("/home/jim/Desktop/Ptuxiaki/TensorFlow/Dataset/MNIST/testing_labels2/"+str(i+1)+".png",labels[i].reshape((28,28),order='C'))
print(total_psnr / TEST_NUMBER)
print(total_ssim / TEST_NUMBER)
if args.size:
if H == 720:
H = 704
W = 1280
else:
H = 1280
W = 704
out = out[:H, :W, :]
GT = cv2.imread(GTpath)[:H, :W, :]
OR = cv2.imread(Bpath)[:H, :W, :]
#print(out.shape, GT.shape, OR.shape)
tempPSNR = psnr(out, GT)
tempSSIM = ssim(out, GT, multichannel=True)
oPSNR = psnr(OR, GT)
oSSIM = ssim(OR, GT, multichannel=True)
#print('output', tempPSNR, tempSSIM)
#print('input', oPSNR, oSSIM)
fsence.write(
str(index) + ':' + image + ' psnr:' + str(oPSNR) + '/' +
str(tempPSNR) + '/' + str(tempPSNR - oPSNR) + ' ssim:' +
str(oSSIM) + '/' + str(tempSSIM) + '/' +
str(tempSSIM - oSSIM) + '\n')
fsence.flush()
'''
cv2.imshow('output', out)
cv2.imshow('GT',GT)
cv2.imshow('OR',OR)
cv2.waitKey(0)
D = D/pj
x = x - lam*D*g
print(np.min(x))
lam = lam0/(n+1)**0.25
#subiter_time[mm] = time.time()-subiter_start
#subseth[mm] = np.sum(hreg(l,counts[mm],dark[mm],flat[mm]))
#Store time immediately after iteration
#iteration_time = np.sum(subiter_time)
iteration_time = time.time() - iter_begin
if n==0 :
T[n,0] = iteration_time - start_time + iter_begin
else:
T[n,0] = iteration_time + T[n-1,0]
SSIM[n,0] = ssim(IMAGE,x/np.max(x))
#Compute and store objective function
obj[n,0] = np.sum(hreg(ffast_radon(x),tmp_counts,tmp_dark,tmp_flat))
itr += 1
# Save objective function and time values
sd.saveme(obj,T,SSIM,N,M)
#Display Time and Objective function vectors.
# print(T)
# print(obj)
# print('end outputs')
fill_data = real_img_data_k.ravel()[filling_idx_k]
obs_point = xy_cor[filling_idx_k, :]
ax[1].scatter(obs_point[:, 0], obs_point[:, 1], c=fill_data, cmap=plt.cm.Blues)
plt.colorbar(gci, ax=ax[1], shrink=0.8)
ax[1].set_xlim(0, Lx)
ax[1].set_ylim(0, Ly)
ax[1].set_title('Input data ({0}% grid data)'.format(
np.int32(k_obs_percent * 100)))
gci = ax[2].contourf(X_dis, Y_dis, blend_k[0, :, :, 0], cmap=plt.cm.Blues)
plt.colorbar(gci, ax=ax[2], shrink=0.8)
ax[2].set_title('Generated data')
plt.savefig(output_figure_save_dir + f'{repeat_num}_k_comparisons.jpg')
ssim_score = ssim(real_img_data_k[0, :, :, 0], blend_k[0, :, :, 0])
print('SSIM score is: ', ssim_score)
# 也可计算PSNR指标
## 绘制用于保存的图
fig, ax = plt.subplots(figsize=(6, 5))
gci = ax.contourf(X_dis, Y_dis, real_img_data_k[0, :, :, 0], cmap=plt.cm.Blues)
plt.colorbar(gci, ax=ax, shrink=0.8)
ax.set_title('Ground truth')
plt.tight_layout()
plt.savefig(output_figure_save_dir + 'Ground_truth.jpg')
fig, ax = plt.subplots(figsize=(6, 5))
fill_data = real_img_data_k.ravel()[filling_idx_k]
obs_point = xy_cor[filling_idx_k, :]
def ssim_compare(self, vecor1, vector2):
ssim_compare = ssim(vecor1, vector2)
return ssim_compare
with odl.util.Timer(reco_method):
odl.solvers.conjugate_gradient_normal(sum_ray_trafo,
reco,
noisy_data,
niter=10,
callback=callback)
else:
odl.solvers.conjugate_gradient_normal(sum_ray_trafo,
reco,
noisy_data,
niter=10,
callback=callback)
multigrid.graphics.show_both(*reco)
# %% SSIM
from skimage.measure import compare_ssim as ssim
full_reco = fine_discr.zero()
odl.solvers.conjugate_gradient_normal(fine_ray_trafo,
full_reco,
noisy_data,
niter=10,
callback=callback)
full_reco_insert = resizing_operator(full_reco)
SSIM = []
Eucl = []
SSIM.append(ssim(reco[1], full_reco_insert))
Eucl.append(np.sqrt(np.sum((full_reco_insert - reco[1])**2)))
print("SSIM: %f, Eucl: %f\n" % (SSIM[0], Eucl[0]))
image = cv2.imread(imagePath)
if image is not None:
#format the image and convert to PIL
contrast1 = Image.fromarray(image)
# resize the file
contrast1 = contrast1.resize((new_width, new_height), Image.ANTIALIAS)
#convert back to opencv format
contrast = np.array(contrast1)
#convert to grayscale
contrast = cv2.cvtColor(contrast, cv2.COLOR_BGR2GRAY)
# compare_images(original, contrast, "Original vs. Contrast")
m = mse(original, contrast)
s = ssim(original, contrast)
print(s)
# Remember, as the MSE increases the images are less similar
# as opposed to the SSIM where smaller values indicate less similarity
if m < 350 or s > 0.4:
# if s > 0.3:
cv2.imshow("Result", image)
cv2.waitKey(0)
#cv2.imshow("Query", query)
def train(upscaling_factor,
residual_blocks,
feature_size,
path_prediction,
checkpoint_dir,
img_width,
img_height,
img_depth,
subpixel_NN,
nn,
restore,
batch_size=1,
div_patches=4,
epochs=10):
traindataset = Train_dataset(batch_size)
iterations_train = math.ceil(
(len(traindataset.subject_list) * 0.8) / batch_size)
num_patches = traindataset.num_patches
# ##========================== DEFINE MODEL ============================##
t_input_gen = tf.placeholder(
'float32',
[int((batch_size * num_patches) / div_patches), None, None, None, 1],
name='t_image_input_to_SRGAN_generator')
t_target_image = tf.placeholder('float32', [
int((batch_size * num_patches) / div_patches), img_width, img_height,
img_depth, 1
],
name='t_target_image')
t_input_mask = tf.placeholder('float32', [
int((batch_size * num_patches) / div_patches), img_width, img_height,
img_depth, 1
],
name='t_image_input_mask')
net_gen = generator(input_gen=t_input_gen,
kernel=3,
nb=residual_blocks,
upscaling_factor=upscaling_factor,
img_height=img_height,
img_width=img_width,
img_depth=img_depth,
subpixel_NN=subpixel_NN,
nn=nn,
feature_size=feature_size,
is_train=True,
reuse=False)
net_d, disc_out_real = discriminator(input_disc=t_target_image,
kernel=3,
is_train=True,
reuse=False)
_, disc_out_fake = discriminator(input_disc=net_gen.outputs,
kernel=3,
is_train=True,
reuse=True)
# test
gen_test = generator(t_input_gen,
kernel=3,
nb=residual_blocks,
upscaling_factor=upscaling_factor,
img_height=img_height,
img_width=img_width,
img_depth=img_depth,
subpixel_NN=subpixel_NN,
nn=nn,
feature_size=feature_size,
is_train=True,
reuse=True)
# ###========================== DEFINE TRAIN OPS ==========================###
if np.random.uniform() > 0.1:
# give correct classifications
y_gan_real = tf.ones_like(disc_out_real)
y_gan_fake = tf.zeros_like(disc_out_real)
else:
# give wrong classifications (noisy labels)
y_gan_real = tf.zeros_like(disc_out_real)
y_gan_fake = tf.ones_like(disc_out_real)
d_loss_real = tf.reduce_mean(tf.square(disc_out_real -
smooth_gan_labels(y_gan_real)),
name='d_loss_real')
d_loss_fake = tf.reduce_mean(tf.square(disc_out_fake -
smooth_gan_labels(y_gan_fake)),
name='d_loss_fake')
d_loss = d_loss_real + d_loss_fake
mse_loss = tf.reduce_sum(tf.square(net_gen.outputs - t_target_image),
axis=[0, 1, 2, 3, 4],
name='g_loss_mse')
dx_real = t_target_image[:, 1:, :, :, :] - t_target_image[:, :-1, :, :, :]
dy_real = t_target_image[:, :, 1:, :, :] - t_target_image[:, :, :-1, :, :]
dz_real = t_target_image[:, :, :, 1:, :] - t_target_image[:, :, :, :-1, :]
dx_fake = net_gen.outputs[:,
1:, :, :, :] - net_gen.outputs[:, :-1, :, :, :]
dy_fake = net_gen.outputs[:, :,
1:, :, :] - net_gen.outputs[:, :, :-1, :, :]
dz_fake = net_gen.outputs[:, :, :,
1:, :] - net_gen.outputs[:, :, :, :-1, :]
gd_loss = tf.reduce_sum(tf.square(tf.abs(dx_real) - tf.abs(dx_fake))) + \
tf.reduce_sum(tf.square(tf.abs(dy_real) - tf.abs(dy_fake))) + \
tf.reduce_sum(tf.square(tf.abs(dz_real) - tf.abs(dz_fake)))
g_gan_loss = 10e-2 * tf.reduce_mean(
tf.square(disc_out_fake -
smooth_gan_labels(tf.ones_like(disc_out_real))),
name='g_loss_gan')
g_loss = mse_loss + g_gan_loss + gd_loss
g_vars = tl.layers.get_variables_with_name('SRGAN_g', True, True)
d_vars = tl.layers.get_variables_with_name('SRGAN_d', True, True)
with tf.variable_scope('learning_rate'):
lr_v = tf.Variable(1e-4, trainable=False)
global_step = tf.Variable(0, trainable=False)
decay_rate = 0.5
decay_steps = 4920 # every 2 epochs (more or less)
learning_rate = tf.train.inverse_time_decay(lr_v,
global_step=global_step,
decay_rate=decay_rate,
decay_steps=decay_steps)
# Optimizers
g_optim = tf.train.AdamOptimizer(learning_rate).minimize(g_loss,
var_list=g_vars)
d_optim = tf.train.AdamOptimizer(learning_rate).minimize(d_loss,
var_list=d_vars)
session = tf.Session()
tl.layers.initialize_global_variables(session)
step = 0
saver = tf.train.Saver()
if restore is not None:
saver.restore(session, tf.train.latest_checkpoint(restore))
val_restore = 0 * epochs
else:
val_restore = 0
array_psnr = []
array_ssim = []
for j in range(val_restore, epochs + val_restore):
for i in range(0, iterations_train):
# ====================== LOAD DATA =========================== #
xt_total = traindataset.patches_true(i)
xm_total = traindataset.mask(i)
for k in range(0, div_patches):
print('{}'.format(k))
xt = xt_total[k *
int((batch_size * num_patches) / div_patches):
(int((batch_size * num_patches) / div_patches) *
k) +
int((batch_size * num_patches) / div_patches)]
xm = xm_total[k *
int((batch_size * num_patches) / div_patches):
(int((batch_size * num_patches) / div_patches) *
k) +
int((batch_size * num_patches) / div_patches)]
# NORMALIZING
for t in range(0, xt.shape[0]):
normfactor = (np.amax(xt[t])) / 2
if normfactor != 0:
xt[t] = ((xt[t] - normfactor) / normfactor)
x_generator = gaussian_filter(xt, sigma=1)
x_generator = zoom(x_generator, [
1, (1 / upscaling_factor), (1 / upscaling_factor),
(1 / upscaling_factor), 1
],
prefilter=False,
order=0)
xgenin = x_generator
# ========================= train SRGAN ========================= #
# update D
errd, _ = session.run([d_loss, d_optim], {
t_target_image: xt,
t_input_gen: xgenin
})
# update G
errg, errmse, errgan, errgd, _ = session.run(
[g_loss, mse_loss, g_gan_loss, gd_loss, g_optim], {
t_input_gen: xgenin,
t_target_image: xt,
t_input_mask: xm
})
print(
"Epoch [%2d/%2d] [%4d/%4d] [%4d/%4d]: d_loss: %.8f g_loss: %.8f (mse: %.6f gdl: %.6f adv: %.6f)"
% (j, epochs + val_restore, i, iterations_train, k,
div_patches - 1, errd, errg, errmse, errgd, errgan))
# ========================= evaluate & save model ========================= #
if k == 1 and i % 20 == 0:
if j - val_restore == 0:
x_true_img = xt[0]
if normfactor != 0:
x_true_img = (
(x_true_img + 1) * normfactor) # denormalize
img_true = nib.Nifti1Image(x_true_img, np.eye(4))
img_true.to_filename(
os.path.join(path_prediction,
str(j) + str(i) + 'true.nii.gz'))
x_gen_img = xgenin[0]
if normfactor != 0:
x_gen_img = (
(x_gen_img + 1) * normfactor) # denormalize
img_gen = nib.Nifti1Image(x_gen_img, np.eye(4))
img_gen.to_filename(
os.path.join(path_prediction,
str(j) + str(i) + 'gen.nii.gz'))
x_pred = session.run(gen_test.outputs,
{t_input_gen: xgenin})
x_pred_img = x_pred[0]
if normfactor != 0:
x_pred_img = (
(x_pred_img + 1) * normfactor) # denormalize
img_pred = nib.Nifti1Image(x_pred_img, np.eye(4))
img_pred.to_filename(
os.path.join(path_prediction,
str(j) + str(i) + '.nii.gz'))
max_gen = np.amax(x_pred_img)
max_real = np.amax(x_true_img)
if max_gen > max_real:
val_max = max_gen
else:
val_max = max_real
min_gen = np.amin(x_pred_img)
min_real = np.amin(x_true_img)
if min_gen < min_real:
val_min = min_gen
else:
val_min = min_real
val_psnr = psnr(np.multiply(x_true_img, xm[0]),
np.multiply(x_pred_img, xm[0]),
dynamic_range=val_max - val_min)
val_ssim = ssim(np.multiply(x_true_img, xm[0]),
np.multiply(x_pred_img, xm[0]),
dynamic_range=val_max - val_min,
multichannel=True)
saver.save(sess=session, save_path=checkpoint_dir, global_step=step)
print("Saved step: [%2d]" % step)
step = step + 1
def compare_images(target, ref):
scores = []
scores.append(psnr(target, ref))
scores.append(mse(target, ref))
scores.append(ssim(target, ref, multichannel=True))
return scores
def inference(self, testset):
np.random.seed(seed=0) #### for reproduce
total_psnr = 0
total_ssim = 0
test_total_count = 0
start = time.time()
im_list = glob('TestData/%s/*.png' % (testset))
im_list = sorted(im_list)
for i in range(len(im_list)):
###### convert to float [0, 1]
im_path = im_list[i]
im_gt = imageio.imread(im_path) / 255.0 ###### range[0,1]
im_noise = im_gt + np.random.normal(0, self.args.sigma / 255.0,
im_gt.shape)
############################ test patch by patch
def get_patch_start(length, patch_size, step_size):
start_list = [
x for x in range(0, length - patch_size, step_size)
]
start_list.append(length - patch_size)
return start_list
h, w = im_noise.shape
patch_size = self.args.test_patch_size ### 144
step_size = self.args.test_step_size ### 100
temp_out = np.zeros((h, w), dtype=np.float64)
temp_count = np.zeros((h, w), dtype=np.float64)
for h0 in get_patch_start(h, patch_size, step_size):
for w0 in get_patch_start(w, patch_size, step_size):
batch_images = im_noise[np.newaxis, h0:h0 + patch_size,
w0:w0 + patch_size, np.newaxis]
test_output_eval = self.sess.run(
self.test_output,
feed_dict={self.test_input:
batch_images}) ## range [0,1]
test_output_eval = test_output_eval[0, :, :, 0]
test_output_eval = np.clip(test_output_eval, 0, 1)
temp_out[
h0:h0 + patch_size, w0:w0 +
patch_size] = temp_out[h0:h0 + patch_size, w0:w0 +
patch_size] + test_output_eval
temp_count[h0:h0 + patch_size, w0:w0 +
patch_size] = temp_count[h0:h0 + patch_size,
w0:w0 + patch_size] + 1
im_out = temp_out / temp_count
###### convert back to uint8 [0 255]
im_noise = np.uint8(np.clip(im_noise, 0, 1) * 255)
im_gt = np.uint8(im_gt * 255)
im_out = np.uint8(im_out * 255)
### save noise
temp_dir = '%s/%s' % (self.args.noise_dir, testset)
if not os.path.exists(temp_dir):
os.makedirs(temp_dir)
save_path = '%s/%s' % (temp_dir, os.path.basename(im_path))
imageio.imsave(save_path, im_noise)
#### save output
temp_dir = '%s/%s' % (self.args.results_dir, testset)
if not os.path.exists(temp_dir):
os.makedirs(temp_dir)
save_path = '%s/%s' % (temp_dir, os.path.basename(im_path))
imageio.imsave(save_path, im_out)
total_psnr = total_psnr + psnr(im_gt, im_out)
total_ssim = total_ssim + ssim(im_gt, im_out)
print("average run time: ", (time.time() - start) / len(im_list))
print('%s, %d ,psnr: %.2f, ssim: %.4f' %
(testset, self.args.sigma, total_psnr / len(im_list),
total_ssim / len(im_list)))
def evaluate(upsampling_factor, residual_blocks, feature_size,
checkpoint_dir_restore, path_volumes, nn, subpixel_NN, img_height,
img_width, img_depth):
traindataset = Train_dataset(1)
iterations = math.ceil((len(traindataset.subject_list) * 0.2))
print(len(traindataset.subject_list))
print(iterations)
totalpsnr = 0
totalssim = 0
array_psnr = np.empty(iterations)
array_ssim = np.empty(iterations)
batch_size = 1
div_patches = 4
num_patches = traindataset.num_patches
# define model
t_input_gen = tf.placeholder('float32', [1, None, None, None, 1],
name='t_image_input_to_SRGAN_generator')
srgan_network = generator(input_gen=t_input_gen,
kernel=3,
nb=residual_blocks,
upscaling_factor=upsampling_factor,
feature_size=feature_size,
subpixel_NN=subpixel_NN,
img_height=img_height,
img_width=img_width,
img_depth=img_depth,
nn=nn,
is_train=False,
reuse=False)
# restore g
sess = tf.Session(config=tf.ConfigProto(allow_soft_placement=True,
log_device_placement=False))
saver = tf.train.Saver(
tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES, scope="SRGAN_g"))
saver.restore(sess, tf.train.latest_checkpoint(checkpoint_dir_restore))
for i in range(0, iterations):
# extract volumes
xt_total = traindataset.data_true(654 + i)
xt_mask = traindataset.mask(654 + i)
normfactor = (np.amax(xt_total[0])) / 2
x_generator = ((xt_total[0] - normfactor) / normfactor)
res = 1 / upsampling_factor
x_generator = x_generator[:, :, :, np.newaxis]
x_generator = gaussian_filter(x_generator, sigma=1)
x_generator = zoom(x_generator, [res, res, res, 1], prefilter=False)
xg_generated = sess.run(srgan_network.outputs,
{t_input_gen: x_generator[np.newaxis, :]})
xg_generated = ((xg_generated + 1) * normfactor)
volume_real = xt_total[0]
volume_real = volume_real[:, :, :, np.newaxis]
volume_generated = xg_generated[0]
volume_mask = aggregate(xt_mask)
# compute metrics
max_gen = np.amax(volume_generated)
max_real = np.amax(volume_real)
if max_gen > max_real:
val_max = max_gen
else:
val_max = max_real
min_gen = np.amin(volume_generated)
min_real = np.amin(volume_real)
if min_gen < min_real:
val_min = min_gen
else:
val_min = min_real
val_psnr = psnr(np.multiply(volume_real, volume_mask),
np.multiply(volume_generated, volume_mask),
dynamic_range=val_max - val_min)
array_psnr[i] = val_psnr
totalpsnr += val_psnr
val_ssim = ssim(np.multiply(volume_real, volume_mask),
np.multiply(volume_generated, volume_mask),
dynamic_range=val_max - val_min,
multichannel=True)
array_ssim[i] = val_ssim
totalssim += val_ssim
print(val_psnr)
print(val_ssim)
# save volumes
filename_gen = os.path.join(path_volumes, str(i) + 'gen.nii.gz')
img_volume_gen = nib.Nifti1Image(volume_generated, np.eye(4))
img_volume_gen.to_filename(filename_gen)
filename_real = os.path.join(path_volumes, str(i) + 'real.nii.gz')
img_volume_real = nib.Nifti1Image(volume_real, np.eye(4))
img_volume_real.to_filename(filename_real)
print('{}{}'.format('PSNR: ', array_psnr))
print('{}{}'.format('SSIM: ', array_ssim))
print('{}{}'.format('Mean PSNR: ', array_psnr.mean()))
print('{}{}'.format('Mean SSIM: ', array_ssim.mean()))
print('{}{}'.format('Variance PSNR: ', array_psnr.var()))
print('{}{}'.format('Variance SSIM: ', array_ssim.var()))
print('{}{}'.format('Max PSNR: ', array_psnr.max()))
print('{}{}'.format('Min PSNR: ', array_psnr.min()))
print('{}{}'.format('Max SSIM: ', array_ssim.max()))
print('{}{}'.format('Min SSIM: ', array_ssim.min()))
print('{}{}'.format('Median PSNR: ', np.median(array_psnr)))
print('{}{}'.format('Median SSIM: ', np.median(array_ssim)))