Python ref Examples

Example #1

File: test_cloudbiolinux.py Project: jfear/snakemakelib

def test_ref_wo_build_config():
    """Test reference function return value when build present but build_config is not"""
    from snakemakelib.bio.ngs.db.cloudbiolinux import ref

    cfg = {"bio.ngs.settings": {"db": {"build": "hg19", "build_config": None, "ref": "foo/bar"}}}
    assert ref("foobar", cfg["bio.ngs.settings"]["db"]) == "foo/foobar"

Example #2

File: test_cloudbiolinux.py Project: jfear/snakemakelib

def test_ref_wo_build():
    """Test reference function return value when build is missing"""
    from snakemakelib.bio.ngs.db.cloudbiolinux import ref

    cfg = {"bio.ngs.settings": {"db": {"build": None, "ref": "foo/bar"}}}
    assert ref("foobar", cfg["bio.ngs.settings"]["db"]) == "foo/foobar"