def test_sharded_parallel_sample_iter_num_batches():
num_shards = 2
batch_size = 2
num_batches_per_bucket = 10
buckets = data_io.define_parallel_buckets(100, 100, 10, 1, 1.0)
bucket_counts = [batch_size * num_batches_per_bucket for _ in buckets]
num_batches_per_shard = num_batches_per_bucket * len(buckets)
num_batches = num_shards * num_batches_per_shard
bucket_batch_sizes = data_io.define_bucket_batch_sizes(
buckets,
batch_size,
batch_by_words=False,
batch_num_devices=1,
data_target_average_len=[None] * len(buckets))
dataset1 = data_io.ParallelDataSet(*_get_random_bucketed_data(
buckets, min_count=0, max_count=5, bucket_counts=bucket_counts))
dataset2 = data_io.ParallelDataSet(*_get_random_bucketed_data(
buckets, min_count=0, max_count=5, bucket_counts=bucket_counts))
with TemporaryDirectory() as work_dir:
shard1_fname = os.path.join(work_dir, 'shard1')
shard2_fname = os.path.join(work_dir, 'shard2')
dataset1.save(shard1_fname)
dataset2.save(shard2_fname)
shard_fnames = [shard1_fname, shard2_fname]
it = data_io.ShardedParallelSampleIter(shard_fnames, buckets,
batch_size, bucket_batch_sizes)
num_batches_seen = 0
while it.iter_next():
it.next()
num_batches_seen += 1
assert num_batches_seen == num_batches
def test_parallel_data_set_permute():
batch_size = 5
buckets = data_io.define_parallel_buckets(100, 100, 10, 1, 1.0)
bucket_batch_sizes = data_io.define_bucket_batch_sizes(
buckets,
batch_size,
batch_by_words=False,
batch_num_devices=1,
data_target_average_len=[None] * len(buckets))
dataset = data_io.ParallelDataSet(*_get_random_bucketed_data(
buckets, min_count=0, max_count=5)).fill_up(bucket_batch_sizes)
permutations, inverse_permutations = data_io.get_permutations(
dataset.get_bucket_counts())
assert len(permutations) == len(inverse_permutations) == len(dataset)
dataset_restored = dataset.permute(permutations).permute(
inverse_permutations)
assert len(dataset) == len(dataset_restored)
for buck_idx in range(len(dataset)):
num_samples = dataset.source[buck_idx].shape[0]
if num_samples:
assert (dataset.source[buck_idx] ==
dataset_restored.source[buck_idx]).asnumpy().all()
assert (dataset.target[buck_idx] ==
dataset_restored.target[buck_idx]).asnumpy().all()
else:
assert not dataset_restored.source[buck_idx]
assert not dataset_restored.target[buck_idx]
def test_get_batch_indices():
max_bucket_size = 50
batch_size = 10
buckets = data_io.define_parallel_buckets(100, 100, 10, 1, 1.0)
bucket_batch_sizes = data_io.define_bucket_batch_sizes(
buckets,
batch_size,
batch_by_words=False,
batch_num_devices=1,
data_target_average_len=[None] * len(buckets))
dataset = data_io.ParallelDataSet(*_get_random_bucketed_data(
buckets=buckets, min_count=1, max_count=max_bucket_size))
indices = data_io.get_batch_indices(dataset,
bucket_batch_sizes=bucket_batch_sizes)
# check for valid indices
for buck_idx, start_pos in indices:
assert 0 <= buck_idx < len(dataset)
assert 0 <= start_pos < len(dataset.source[buck_idx]) - batch_size + 1
# check that all indices are used for a filled-up dataset
dataset = dataset.fill_up(bucket_batch_sizes)
indices = data_io.get_batch_indices(dataset,
bucket_batch_sizes=bucket_batch_sizes)
all_bucket_indices = set(list(range(len(dataset))))
computed_bucket_indices = set([i for i, j in indices])
assert not all_bucket_indices - computed_bucket_indices
def test_get_batch_indices():
pytest.importorskip('mxnet')
from sockeye import data_io
max_bucket_size = 50
batch_size = 10
buckets = data_io.define_parallel_buckets(100, 100, 10, True, 1.0)
bucket_batch_sizes = data_io.define_bucket_batch_sizes(buckets,
batch_size,
batch_type=C.BATCH_TYPE_SENTENCE,
batch_num_devices=1,
data_target_average_len=[None] * len(buckets))
dataset = data_io.ParallelDataSet(*_get_random_bucketed_data(buckets=buckets,
min_count=1,
max_count=max_bucket_size))
indices = data_io.get_batch_indices(dataset, bucket_batch_sizes=bucket_batch_sizes)
# check for valid indices
for buck_idx, start_pos in indices:
assert 0 <= buck_idx < len(dataset)
assert 0 <= start_pos < len(dataset.source[buck_idx]) - batch_size + 1
# check that all indices are used for a filled-up dataset
dataset = dataset.fill_up(bucket_batch_sizes)
indices = data_io.get_batch_indices(dataset, bucket_batch_sizes=bucket_batch_sizes)
all_bucket_indices = set(list(range(len(dataset))))
computed_bucket_indices = set([i for i, j in indices])
assert not all_bucket_indices - computed_bucket_indices
def test_parallel_data_set_permute():
pytest.importorskip('mxnet')
from sockeye import data_io
batch_size = 5
buckets = data_io.define_parallel_buckets(100, 100, 10, True, 1.0)
bucket_batch_sizes = data_io.define_bucket_batch_sizes(buckets,
batch_size,
batch_type=C.BATCH_TYPE_SENTENCE,
batch_num_devices=1,
data_target_average_len=[None] * len(buckets))
dataset = data_io.ParallelDataSet(*_get_random_bucketed_data(buckets, min_count=0, max_count=5)).fill_up(
bucket_batch_sizes)
permutations, inverse_permutations = data_io.get_permutations(dataset.get_bucket_counts())
assert len(permutations) == len(inverse_permutations) == len(dataset)
dataset_restored = dataset.permute(permutations).permute(inverse_permutations)
assert len(dataset) == len(dataset_restored)
for buck_idx in range(len(dataset)):
num_samples = dataset.source[buck_idx].shape[0]
if num_samples:
assert (dataset.source[buck_idx] == dataset_restored.source[buck_idx]).all()
assert (dataset.target[buck_idx] == dataset_restored.target[buck_idx]).all()
else:
assert not dataset_restored.source[buck_idx]
assert not dataset_restored.target[buck_idx]
def test_parallel_sample_iter():
batch_size = 2
buckets = data_io.define_parallel_buckets(100, 100, 10, True, 1.0)
# The first bucket is going to be empty:
bucket_counts = [0] + [None] * (len(buckets) - 1)
bucket_batch_sizes = data_io.define_bucket_batch_sizes(
buckets,
batch_size,
batch_type=C.BATCH_TYPE_SENTENCE,
data_target_average_len=[None] * len(buckets))
dataset = data_io.ParallelDataSet(*_get_random_bucketed_data(
buckets, min_count=0, max_count=5, bucket_counts=bucket_counts))
it = data_io.ParallelSampleIter(dataset, buckets, batch_size,
bucket_batch_sizes)
with TemporaryDirectory() as work_dir:
# Test 1
it.next()
expected_batch = it.next()
fname = os.path.join(work_dir, "saved_iter")
it.save_state(fname)
it_loaded = data_io.ParallelSampleIter(dataset, buckets, batch_size,
bucket_batch_sizes)
it_loaded.reset()
it_loaded.load_state(fname)
loaded_batch = it_loaded.next()
assert _data_batches_equal(expected_batch, loaded_batch)
# Test 2
it.reset()
expected_batch = it.next()
it.save_state(fname)
it_loaded = data_io.ParallelSampleIter(dataset, buckets, batch_size,
bucket_batch_sizes)
it_loaded.reset()
it_loaded.load_state(fname)
loaded_batch = it_loaded.next()
assert _data_batches_equal(expected_batch, loaded_batch)
# Test 3
it.reset()
expected_batch = it.next()
it.save_state(fname)
it_loaded = data_io.ParallelSampleIter(dataset, buckets, batch_size,
bucket_batch_sizes)
it_loaded.reset()
it_loaded.load_state(fname)
loaded_batch = it_loaded.next()
assert _data_batches_equal(expected_batch, loaded_batch)
while it.iter_next():
it.next()
it_loaded.next()
assert not it_loaded.iter_next()
def test_sharded_and_parallel_iter_same_num_batches():
""" Tests that a sharded data iterator with just a single shard produces as many shards as an iterator directly
using the same dataset. """
batch_size = 2
num_batches_per_bucket = 10
buckets = data_io.define_parallel_buckets(100, 100, 10, 1.0)
bucket_counts = [batch_size * num_batches_per_bucket for _ in buckets]
num_batches = num_batches_per_bucket * len(buckets)
bucket_batch_sizes = data_io.define_bucket_batch_sizes(
buckets,
batch_size,
batch_by_words=False,
batch_num_devices=1,
data_target_average_len=[None] * len(buckets))
dataset = data_io.ParallelDataSet(*_get_random_bucketed_data(
buckets, min_count=0, max_count=5, bucket_counts=bucket_counts))
with TemporaryDirectory() as work_dir:
shard_fname = os.path.join(work_dir, 'shard1')
dataset.save(shard_fname)
shard_fnames = [shard_fname]
it_sharded = data_io.ShardedParallelSampleIter(shard_fnames, buckets,
batch_size,
bucket_batch_sizes,
'replicate')
it_parallel = data_io.ParallelSampleIter(dataset, buckets, batch_size,
bucket_batch_sizes)
num_batches_seen = 0
while it_parallel.iter_next():
assert it_sharded.iter_next()
it_parallel.next()
it_sharded.next()
num_batches_seen += 1
assert num_batches_seen == num_batches
print("Resetting...")
it_sharded.reset()
it_parallel.reset()
num_batches_seen = 0
while it_parallel.iter_next():
assert it_sharded.iter_next()
it_parallel.next()
it_sharded.next()
num_batches_seen += 1
assert num_batches_seen == num_batches
def test_parallel_data_set():
buckets = data_io.define_parallel_buckets(100, 100, 10, 1, 1.0)
source, target = _get_random_bucketed_data(buckets, min_count=0, max_count=5)
def check_equal(arrays1, arrays2):
assert len(arrays1) == len(arrays2)
for a1, a2 in zip(arrays1, arrays2):
assert np.array_equal(a1.asnumpy(), a2.asnumpy())
with TemporaryDirectory() as work_dir:
dataset = data_io.ParallelDataSet(source, target)
fname = os.path.join(work_dir, 'dataset')
dataset.save(fname)
dataset_loaded = data_io.ParallelDataSet.load(fname)
check_equal(dataset.source, dataset_loaded.source)
check_equal(dataset.target, dataset_loaded.target)
def test_parallel_data_set_fill_up():
batch_size = 32
buckets = data_io.define_parallel_buckets(100, 100, 10, 1, 1.0)
bucket_batch_sizes = data_io.define_bucket_batch_sizes(buckets,
batch_size,
batch_type=C.BATCH_TYPE_SENTENCE,
batch_num_devices=1,
data_target_average_len=[None] * len(buckets))
dataset = data_io.ParallelDataSet(*_get_random_bucketed_data(buckets, min_count=1, max_count=5))
dataset_filled_up = dataset.fill_up(bucket_batch_sizes)
assert len(dataset_filled_up.source) == len(dataset.source)
assert len(dataset_filled_up.target) == len(dataset.target)
for bidx in range(len(dataset)):
bucket_batch_size = bucket_batch_sizes[bidx].batch_size
assert dataset_filled_up.source[bidx].shape[0] == bucket_batch_size
assert dataset_filled_up.target[bidx].shape[0] == bucket_batch_size
def test_parallel_data_set_fill_up():
batch_size = 32
buckets = data_io.define_parallel_buckets(100, 100, 10, 1.0)
bucket_batch_sizes = data_io.define_bucket_batch_sizes(buckets,
batch_size,
batch_by_words=False,
batch_num_devices=1,
data_target_average_len=[None] * len(buckets))
dataset = data_io.ParallelDataSet(*_get_random_bucketed_data(buckets, min_count=1, max_count=5))
dataset_filled_up = dataset.fill_up(bucket_batch_sizes, 'replicate')
assert len(dataset_filled_up.source) == len(dataset.source)
assert len(dataset_filled_up.target) == len(dataset.target)
assert len(dataset_filled_up.label) == len(dataset.label)
for bidx in range(len(dataset)):
bucket_batch_size = bucket_batch_sizes[bidx].batch_size
assert dataset_filled_up.source[bidx].shape[0] == bucket_batch_size
assert dataset_filled_up.target[bidx].shape[0] == bucket_batch_size
assert dataset_filled_up.label[bidx].shape[0] == bucket_batch_size
def test_sharded_parallel_sample_iter():
batch_size = 2
buckets = data_io.define_parallel_buckets(100, 100, 10, 1, 1.0)
# The first bucket is going to be empty:
bucket_counts = [0] + [None] * (len(buckets) - 1)
bucket_batch_sizes = data_io.define_bucket_batch_sizes(
buckets,
batch_size,
batch_by_words=False,
batch_num_devices=1,
data_target_average_len=[None] * len(buckets))
dataset1 = data_io.ParallelDataSet(*_get_random_bucketed_data(
buckets, min_count=0, max_count=5, bucket_counts=bucket_counts))
dataset2 = data_io.ParallelDataSet(*_get_random_bucketed_data(
buckets, min_count=0, max_count=5, bucket_counts=bucket_counts))
with TemporaryDirectory() as work_dir:
shard1_fname = os.path.join(work_dir, 'shard1')
shard2_fname = os.path.join(work_dir, 'shard2')
dataset1.save(shard1_fname)
dataset2.save(shard2_fname)
shard_fnames = [shard1_fname, shard2_fname]
it = data_io.ShardedParallelSampleIter(shard_fnames, buckets,
batch_size, bucket_batch_sizes,
'replicate')
# Test 1
it.next()
expected_batch = it.next()
fname = os.path.join(work_dir, "saved_iter")
it.save_state(fname)
it_loaded = data_io.ShardedParallelSampleIter(shard_fnames, buckets,
batch_size,
bucket_batch_sizes,
'replicate')
it_loaded.reset()
it_loaded.load_state(fname)
loaded_batch = it_loaded.next()
assert _data_batches_equal(expected_batch, loaded_batch)
# Test 2
it.reset()
expected_batch = it.next()
it.save_state(fname)
it_loaded = data_io.ShardedParallelSampleIter(shard_fnames, buckets,
batch_size,
bucket_batch_sizes,
'replicate')
it_loaded.reset()
it_loaded.load_state(fname)
loaded_batch = it_loaded.next()
assert _data_batches_equal(expected_batch, loaded_batch)
# Test 3
it.reset()
expected_batch = it.next()
it.save_state(fname)
it_loaded = data_io.ShardedParallelSampleIter(shard_fnames, buckets,
batch_size,
bucket_batch_sizes,
'replicate')
it_loaded.reset()
it_loaded.load_state(fname)
loaded_batch = it_loaded.next()
assert _data_batches_equal(expected_batch, loaded_batch)
while it.iter_next():
it.next()
it_loaded.next()
assert not it_loaded.iter_next()