def python2(script, args="", **kwargs):
"""Execute specified script using python2, and python if python2 does
not exist. This action accepts common action arguments such as
input, active, workdir, docker_image and args. In particular, content of one or more files
specified by option input would be prepended before the specified script."""
return SoS_ExecuteScript(script, ["python2", "python2.7", "python"], ".py",
args).run(**kwargs)
def python3(script, args='', **kwargs):
'''Execute specified script using python3, and python if python3 does
not exist. This action accepts common action arguments such as
input, active, workdir, docker_image and args. In particular, content of one or more files
specified by option input would be prepended before the specified script.'''
return SoS_ExecuteScript(script, ['python3', 'python'], '.py',
args).run(**kwargs)
def julia(script, args="", **kwargs):
"""Execute specified Julia script with command julia. This action accepts common
action arguments such as input, active, workdir, docker_image and args. In
particular, content of one or more files specified by option input would be
prepended before the specified script.
"""
return SoS_ExecuteScript(script, "julia", ".jl", args).run(**kwargs)
def node(script, args='', **kwargs):
'''Execute specified script with command node. This action accepts common action arguments
such as input, active, workdir, docker_image and args. In particular, content of one or
more files specified by option input would be prepended before the specified script.
'''
return SoS_ExecuteScript(
script, 'node', '.js', args).run(**kwargs)
def octave(script, args="", **kwargs):
"""Execute specified script with command Matlab, with default options
"-nodisplay -r". This action accepts common action arguments such as input,
active, workdir, docker_image and args. In particular, content of one or more
files specified by option input would be
prepended before the specified script.
"""
return SoS_ExecuteScript(script, "octave", ".m", args).run(**kwargs)
def matlab(script, args='''-nojvm -nodisplay -nosplash -nodesktop -r "try, run('{filename}'), catch me, fprintf('%s / %s\\n',me.identifier,me.message), exit(1), end, exit(0);"''', **kwargs):
'''Execute specified script with command Matlab, with default options
"-nojvm -nodisplay -nosplash -nodesktop -r". This action accepts common action arguments such as input,
active, workdir, docker_image and args. In particular, content of one or more
files specified by option input would be
prepended before the specified script.
'''
return SoS_ExecuteScript(
script, 'matlab', '.m', args).run(**kwargs)
def R(script, args='', **kwargs):
'''Execute specified script with command Rscript, with default options
"--default-packages=datasets,methods,utils,stats,grDevices,graphics". This action accepts
common action arguments such as input, active, workdir, docker_image and args.
In particular, content of one or more files specified by option input would be
prepended before the specified script.
'''
# > getOption('defaultPackages')
# [1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
return SoS_ExecuteScript(script, 'Rscript', '.R', args).run(**kwargs)
def ruby(script, args="", **kwargs):
"""Execute specified script using ruby. This action accepts common action arguments such as
input, active, workdir, docker_image and args. In particular, content of one or more files
specified by option input would be prepended before the specified script."""
return SoS_ExecuteScript(script, "ruby", ".rb", args).run(**kwargs)
def bash(script, args='', **kwargs):
'''Execute specified script using bash. This action accepts common action arguments such as
input, active, workdir, docker_image and args. In particular, content of one or more files
specified by option input would be prepended before the specified script.'''
return SoS_ExecuteScript(script, ['/bin/bash', 'bash'], '.sh',
args).run(**kwargs)
def python(script, args='', **kwargs):
'''Execute specified script using python (which can be python 2 or 3 depending on
system configuration. This action accepts common action arguments such as
input, active, workdir, docker_image and args. In particular, content of one or more files
specified by option input would be prepended before the specified script.'''
return SoS_ExecuteScript(script, 'python', '.py', args).run(**kwargs)